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[188932_at] dehydrogenase

Description D1054.8 /REP_DB=WormBase Gene ID /WP=CE05526 /TR=Q18946 /GB=CAA98438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 11      6grp_total > 08      4grp_total > 52      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 736
1 2 3 4 range
A 1158.3
(2.5)
P 		1128.2
(2.2)
P 		1219.4
(3)
P 		533.2
(-3)
P 		686
B 1040.9
(1.7)
P 		1147.7
(3)
P 		1017.7
(1.5)
P 		644.4
(-3)
P 		503
C 1140.8
(2.1)
P 		1255.7
(3)
P 		1013.1
(1)
P 		519.3
(-3)
P 		736
avr 1113.3
(2.4) 		1177.2
(3) 		1083.4
(2.1) 		565.6
(-3) 		612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2057
1 2 3 4 5 6 range
A 2586
(3)
P 		1165.1
(-1.1)
P 		1544.1
(-0)
P 		1184.7
(-1.1)
P 		948.4
(-1.8)
P 		529.2
(-3)
P 		2057
B 2209.1
(3)
P 		1305.3
(-0.5)
P 		1793
(1.4)
P 		1231.6
(-0.7)
P 		835.5
(-2.3)
P 		641.6
(-3)
P 		1568
C 2038.7
(3)
P 		1331.5
(-0.3)
P 		1543.4
(0.7)
P 		1574.9
(0.9)
P 		747.4
(-3)
P 		739.7
(-3)
P 		1299
avr 2277.9
(3) 		1267.3
(-0.7) 		1626.8
(0.6) 		1330.4
(-0.5) 		843.8
(-2.2) 		636.8
(-3) 		1641
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 421.7
(3)
P 		244.9
(-0.1)
P 		318.8
(1.2)
P 		78.1
(-3)
P 		344
B 332
(3)
P 		283.4
(1.5)
P 		235.8
(0)
P 		137.3
(-3)
P 		195
C 377.7
(3)
P 		361
(2.7)
P 		353.1
(2.5)
P 		87.6
(-3)
P 		290
avr 377.1
(3) 		296.4
(1.2) 		302.6
(1.4) 		101
(-3) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 640
1 2 3 4 5 6 range
A 476.7
(3)
P 		414.4
(1.9)
P 		336.3
(0.6)
P 		300.5
(-0)
P 		286.2
(-0.3)
P 		128.8
(-3)
P 		348
B 768.6
(3)
P 		434.5
(-0.8)
P 		435.4
(-0.8)
P 		326.2
(-2)
P 		339.5
(-1.9)
P 		239.3
(-3)
P 		529
C 755.6
(3)
P 		406.3
(-1.1)
P 		392.8
(-1.2)
P 		316.7
(-2.1)
P 		241.8
(-3)
P 		247.6
(-2.9)
P 		514
avr 667
(3) 		418.4
(-0.2) 		388.2
(-0.6) 		314.5
(-1.6) 		289.2
(-1.9) 		205.2
(-3) 		462
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14738
Sequence Type Exemplar sequence
Representative Public ID D1054.8 NCBI
Target Description D1054.8 /REP_DB=WormBase Gene ID /WP=CE05526 /TR=Q18946 /GB=CAA98438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073354 NCBI Caenorhabditis elegans D1054.8 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000017221 ENSEMBL cdna:SNAP chromosome:CEL140:V:10786909:10787908:1 11/11 None
GENEFINDER00000017243 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10786909:10787908:1 11/11 None
D1054.8 ENSEMBL cdna:known chromosome:CEL140:V:10786909:10787955:1 gene:D1054.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10786908-10787908(+) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl D1054.8
Entrez Gene 183917 Entrez gene
SwissProt Q18946 EMBL-EBI
WormBase CE05526 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585779_S_AT similar to dehydrogenase/reductase (SDR family) member 6 cfa
CANINE:1599400_AT similar to dehydrogenase/reductase (SDR family) member 6 cfa
CANINE_2:CFAAFFX.16888.1.S1_AT similar to dehydrogenase/reductase (SDR family) member 6 cfa
CANINE_2:CFAAFFX.16888.1.S1_S_AT similar to dehydrogenase/reductase (SDR family) member 6 cfa
CANINE_2:CFAAFFX.16892.1.S1_AT similar to dehydrogenase/reductase (SDR family) member 6 cfa
CHICKEN:GGA.2925.1.S1_AT dehydrogenase/reductase (SDR family) member 6 gga
MOUSE430_2:1453011_AT dehydrogenase/reductase (SDR family) member 6 mm
MOE430B:1453011_AT dehydrogenase/reductase (SDR family) member 6 mm
MG-U74CV2:165809_AT Dehydrogenase/reductase (SDR family) member 6 (Dhrs6), mRNA mm
MU19KSUBB:TC31075_AT Dehydrogenase/reductase (SDR family) member 6 (Dhrs6), mRNA mm
RG-U34C:RC_AI232784_AT dehydrogenase/reductase (SDR family) member 6 (predicted) rn
RAE230A:1372613_AT dehydrogenase/reductase (SDR family) member 6 (predicted) rn
RAT230_2:1372613_AT dehydrogenase/reductase (SDR family) member 6 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98438 Hypothetical protein D1054.8 [Caenorhabditis elegans] ref|NP_505755.1| D1054.8 [Caenorhabditis elegans] pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditis Elegans In The Apo-Form 1.0E-151
blast CAE64891 Hypothetical protein CBG09704 [Caenorhabditis briggsae] 1.0E-135
blast CAE66768 Hypothetical protein CBG12123 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.0E-56
Sequence
Target Sequence 
>C. ELEGANS:188932_AT
tgagattctcagcacaactttgggaaaattcggaaaacttgacattttggttaacaatgc
tggtgccgcgatcccagactcccaaagtaaaactggaactgctcaaagtattgaaagcta
cgatgctactttgaatcttaatttgagaagtgtgattgcactgacaaagaaggctgttcc
acatttgtcttctaccaagggagaaattgtcaatatttctagcattgcttctggacttca
tgctacaccagacttcccatattactcaattgcaaaagcagccattgatcaatatactcg
taatacagcaattgatcttattcaacacgggattcgtgttaactcaattagtccaggact
cgttgcaactggatttggttcagcaatgggaatgccagaagaaacatcaaagaaattcta
ttcgaccatggctacgatgaaggaatgtgtcccagcaggagtaatgggacaaccacagga
tattgctgaagtcattgcttttttggccgataggaagacatcatcatacatcattgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGATTCTCAGCACAACTTTGGGA 497 549 234 Antisense
GGTTAACAATGCTGGTGCCGCGATC 334 505 282 Antisense
GATCCCAGACTCCCAAAGTAAAACT 471 417 303 Antisense
TTCCACATTTGTCTTCTACCAAGGG 238 699 410 Antisense
TCTAGCATTGCTTCTGGACTTCATG 41 615 451 Antisense
TGGACTTCATGCTACACCAGACTTC 635 547 465 Antisense
GACTCGTTGCAACTGGATTTGGTTC 12 375 590 Antisense
GAAATTCTATTCGACCATGGCTACG 201 363 645 Antisense
GAAGGAATGTGTCCCAGCAGGAGTA 256 333 672 Antisense
GTCATTGCTTTTTTGGCCGATAGGA 259 465 724 Antisense
GGAAGACATCATCATACATCATTGG 584 531 746 Antisense
Sequence Source Affymetrix Proprietary Database