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[188930_at] NADH oxidase

Description T10B5.8 /REP_DB=WormBase Gene ID /WP=CE18238 /TR=O76410 /GB=AAC19231.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=NADH oxidase
Cluster 6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 89.1
(-2.3)
A 		92.2
(-2.2)
A 		74.2
(-3)
A 		202.8
(3)
A 		129
B 97.9
(-1.4)
A 		64.9
(-2.2)
A 		30.3
(-3)
A 		279.5
(3)
A 		249
C 86.8
(-1.8)
A 		41.4
(-3)
A 		65.8
(-2.4)
A 		272.4
(3)
A 		231
avr 91.3
(-1.9) 		66.2
(-2.7) 		56.8
(-3) 		251.6
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 61.5
(-2.6)
A 		160.3
(3)
A 		93
(-0.8)
A 		53.5
(-3)
A 		99.8
(-0.4)
A 		129
(1.2)
A 		107
B 92.5
(-1.4)
A 		143
(3)
A 		129
(1.8)
A 		74.4
(-3)
A 		111.5
(0.2)
M 		121.5
(1.1)
A 		69
C 42
(-3)
A 		141.1
(3)
A 		100.5
(0.5)
A 		65.8
(-1.6)
A 		112.2
(1.3)
A 		89.7
(-0.1)
M 		99
avr 65.3
(-2.9) 		148.1
(3) 		107.5
(0.1) 		64.6
(-3) 		107.8
(0.1) 		113.4
(0.5) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 32.4
(3)
A 		20
(-2.7)
A 		19.4
(-3)
A 		29.7
(1.8)
A 		13
B 31.2
(-0.2)
A 		16
(-2)
A 		7
(-3)
A 		59.6
(3)
A 		53
C 28.7
(-0)
A 		11.9
(-3)
A 		22.9
(-1.1)
A 		45.9
(3)
A 		34
avr 30.8
(0.1) 		16
(-3) 		16.4
(-2.9) 		45.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 11.3
(-3)
A 		57
(3)
A 		20.3
(-1.8)
A 		13.6
(-2.7)
A 		30.1
(-0.5)
A 		31.4
(-0.4)
A 		46
B 32.2
(-0.3)
A 		47.6
(3)
A 		31.3
(-0.5)
A 		19.7
(-3)
A 		45.3
(2.5)
M 		45.3
(2.5)
A 		28
C 15.6
(-2.5)
A 		43.1
(3)
A 		25.6
(-0.5)
A 		13.2
(-3)
A 		36.3
(1.6)
A 		30
(0.4)
M 		30
avr 19.7
(-2.3) 		49.2
(3) 		25.7
(-1.2) 		15.5
(-3) 		37.2
(0.9) 		35.6
(0.6) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15105
Sequence Type Exemplar sequence
Representative Public ID T10B5.8 NCBI
Target Description T10B5.8 /REP_DB=WormBase Gene ID /WP=CE18238 /TR=O76410 /GB=AAC19231.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=NADH oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071115 NCBI Caenorhabditis elegans T10B5.8 (T10B5.8) mRNA, complete cds. 11/11 None
SNAP00000014345 ENSEMBL cdna:SNAP chromosome:CEL140:V:1841888:1844514:1 11/11 None
GENEFINDER00000014357 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1841888:1844514:1 11/11 None
T10B5.8 ENSEMBL cdna:known chromosome:CEL140:V:1841888:1844514:1 gene:T10B5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1841887-1844514(+) 100.0 100.0
chrV:6113894-6115526(-) 91.08 91.08
Public Domain and Genome References
Gene Title NADH oxidase
Ensembl T10B5.8
Entrez Gene 188353 Entrez gene
SwissProt O76410 EMBL-EBI
WormBase CE18238 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19231 Hypothetical protein T10B5.8 [Caenorhabditis elegans] ref|NP_503516.1| T10B5.8 [Caenorhabditis elegans] 0.0
blast AAB65282 Hypothetical protein F17A9.5 [Caenorhabditis elegans] ref|NP_504579.1| F17A9.5 [Caenorhabditis elegans] 0.0
blast CAE58237 Hypothetical protein CBG01337 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001155 EMBL-EBI NADH:flavin oxidoreductase/NADH oxidase 4.8E-44
Sequence
Target Sequence 
>C. ELEGANS:188930_AT
aggactcactttggaggatgctaaaactatgtgtcaagtatatgagagcaaaggatttga
ctttgtagagctatctggaggaacatatgagcagctcaactggacctgggaacgagagtc
gactaagaagagggaggcatttttcgttgaatttgccgagcagattcggccagtttttaa
taaaacggtggtatatttgactggaggatttcgaacagtttctgcaatgattaatgcaat
ctcctgtaatgcaactcaaggaattggcctcgggcgtccaattacagcggagccagatct
gccaaagaagattctaaaaggaagagtcatttcagcagttcaagactcattcaatccaaa
tgatattgcaacaactgcgttggcaagtggcacacaaatggatcaaatggggcgtacgag
tctggaaaaagcgagcggaaatataatgcatctaatcaccgacttcagtgatgggctcac
cgttcaaaaattttgtgaagctttgggccatcatgtggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACTCACTTTGGAGGATGCTAAA 549 53 789 Antisense
GGATTTGACTTTGTAGAGCTATCTG 652 507 841 Antisense
GAGGGAGGCATTTTTCGTTGAATTT 654 401 918 Antisense
CGAGCAGATTCGGCCAGTTTTTAAT 498 249 945 Antisense
GGAGGATTTCGAACAGTTTCTGCAA 150 517 991 Antisense
AAGGAAGAGTCATTTCAGCAGTTCA 510 161 1106 Antisense
ACAACTGCGTTGGCAAGTGGCACAC 379 111 1159 Antisense
GGGGCGTACGAGTCTGGAAAAAGCG 134 493 1197 Antisense
CACCGACTTCAGTGATGGGCTCACC 319 201 1245 Antisense
ATGGGCTCACCGTTCAAAAATTTTG 299 39 1259 Antisense
GAAGCTTTGGGCCATCATGTGGAAC 669 341 1285 Antisense
Sequence Source Affymetrix Proprietary Database