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[188929_at] Glycoprotein

Description F59A6.3 /REP_DB=WormBase Gene ID /WP=CE01981 /TR=Q21027 /GB=AAK31523.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glycoprotein
Cluster 6grp_total > 46      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 5.9
(-3)
A 		6.3
(-2.9)
A 		12.4
(-1.8)
A 		37.4
(3)
A 		32
B 13.8
(-1.6)
A 		5.2
(-3)
A 		42.7
(3)
A 		16
(-1.3)
A 		38
C 23.3
(0.9)
A 		34
(3)
A 		23.7
(1)
A 		2.8
(-3)
A 		31
avr 14.3
(-3) 		15.2
(-2.6) 		26.3
(3) 		18.7
(-0.8) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 7.1
(-2.6)
A 		21.2
(-0.4)
A 		43.1
(3)
A 		4.2
(-3)
A 		36.6
(2)
A 		15.2
(-1.3)
A 		39
B 13
(-0.5)
A 		27.5
(3)
A 		2.3
(-3)
A 		6
(-2.1)
A 		9.6
(-1.3)
A 		24.8
(2.4)
A 		25
C 30.5
(2.9)
A 		25.8
(1.9)
A 		5.8
(-2.3)
A 		25.5
(1.8)
A 		2.4
(-3)
A 		31.2
(3)
A 		29
avr 16.9
(-0.7) 		24.8
(3) 		17.1
(-0.6) 		11.9
(-3) 		16.2
(-1) 		23.7
(2.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.1
(-2)
A 		1.4
(-3)
A 		3.2
(-0.4)
A 		5.5
(3)
A 		4
B 4.4
(-0.8)
A 		1.3
(-3)
A 		9.9
(3)
A 		3.4
(-1.5)
A 		9
C 7.7
(1.6)
A 		9.8
(3)
A 		8.2
(2)
A 		0.5
(-3)
A 		9
avr 4.7
(-0.6) 		4.2
(-1.4) 		7.1
(3) 		3.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		7.5
(0.8)
A 		9.4
(2)
A 		1.1
(-3)
A 		11.1
(3)
A 		3.7
(-1.4)
A 		10
B 4.5
(-0.3)
A 		9.1
(2.9)
A 		0.6
(-3)
A 		1.6
(-2.3)
A 		3.9
(-0.7)
A 		9.2
(3)
A 		9
C 11.3
(3)
A 		7.9
(1.1)
A 		1.5
(-2.6)
A 		5.1
(-0.5)
A 		0.8
(-3)
A 		10.4
(2.5)
A 		11
avr 5.7
(0.3) 		8.2
(3) 		3.8
(-1.7) 		2.6
(-3) 		5.3
(-0.1) 		7.8
(2.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4505
Sequence Type Exemplar sequence
Representative Public ID F59A6.3 NCBI
Target Description F59A6.3 /REP_DB=WormBase Gene ID /WP=CE01981 /TR=Q21027 /GB=AAK31523.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glycoprotein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062522 NCBI Caenorhabditis elegans F59A6.3 (Glycoprotein) mRNA, complete cds. 11/11 None
F59A6.3 ENSEMBL cdna:known chromosome:CEL140:II:5008325:5011163:1 gene:F59A6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007648 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5008322-5011161(+) 100.0 100.0
Public Domain and Genome References
Gene Title Glycoprotein
Ensembl F59A6.3
Entrez Gene 186581 Entrez gene
SwissProt Q21027 EMBL-EBI
WormBase CE01981 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.13595.1.S1_AT mucin protein gga
CHICKEN:GGAAFFX.22043.1.S1_AT mucin protein gga
CHICKEN:GGAAFFX.4169.1.S1_AT mucin protein gga
CHICKEN:GGAAFFX.4186.1.S1_AT mucin protein gga
CHICKEN:GGAAFFX.4188.1.S1_AT mucin protein gga
Protein Similarities
Method ID Description E-Value
blast AAK31523 Hypothetical protein F59A6.3 [Caenorhabditis elegans] ref|NP_494923.1| F59A6.3 [Caenorhabditis elegans] 1.0E-50
blast CAA87369 Hypothetical protein F26C11.3 [Caenorhabditis elegans] ref|NP_496139.3| F26C11.3 [Caenorhabditis elegans] sp|Q09550|YQU3_CAEEL Hypothetical protein F26C11.3 precursor 4.0E-11
blast CAE57944 Hypothetical protein CBG00999 [Caenorhabditis briggsae] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:188929_AT
tggaccttcaacaacttccggtccttctacaacatctggaagcacaaaatcaacaacctc
tggtccgtctacaacttcaggaaaaaatatttcaactgtttcaggaaaattaacaggttc
aacgacatcagcaacaatttcaagtgcatttggagggaatgtgacttttacctcaaaacc
ttcaaactcatcaggagggacaacatcttccgggaaaaatttctcgcaaaatacaacgtc
tgcagcaaatggaacaactcaagcagttaacaatggcaaatctggctcaacacttccaac
caattcatcttctggatcttctgattcatcaacatcaccatcaacattcacagtttctta
caacaacacaaattcctctatcacttgcatcgaaccatccctgaacttgacctacacttc
cagtccaacttcttcacaaatcaaaagcagttattctgtcggagagctcatcactcaagt
ttgcccgcaatcttatgtttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACCTTCAACAACTTCCGGTCCT 660 543 1755 Antisense
AAAATCAACAACCTCTGGTCCGTCT 399 123 1800 Antisense
TCTGGTCCGTCTACAACTTCAGGAA 142 609 1813 Antisense
ACCTCAAAACCTTCAAACTCATCAG 333 85 1924 Antisense
GCAAATCTGGCTCAACACTTCCAAC 665 317 2030 Antisense
CACTTCCAACCAATTCATCTTCTGG 684 195 2045 Antisense
TCAACATCACCATCAACATTCACAG 21 631 2083 Antisense
ACAAATTCCTCTATCACTTGCATCG 362 111 2122 Antisense
CTGAACTTGACCTACACTTCCAGTC 672 237 2155 Antisense
GAGAGCTCATCACTCAAGTTTGCCC 257 395 2216 Antisense
GTTTGCCCGCAATCTTATGTTTTTG 486 451 2233 Antisense
Sequence Source Affymetrix Proprietary Database