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[188928_at] 7TM receptor

Description F07B10.3 /REP_DB=WormBase Gene ID /WP=CE15757 /TR=O17563 /GB=CAB01142.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 01      4grp_total > 09      6grp_cgc > 54      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 3.6
(-2.9)
A 		2.7
(-3)
A 		9.1
(-2.6)
A 		91.9
(3)
A 		89
B 8.5
(-2.3)
A 		3.1
(-3)
A 		12
(-1.9)
A 		50
(3)
A 		47
C 3.4
(-3)
A 		27.3
(-1.8)
A 		5.2
(-2.9)
A 		125.9
(3)
M 		123
avr 5.2
(-3) 		11
(-2.6) 		8.8
(-2.7) 		89.3
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 20.5
(-0.3)
A 		14.5
(-1.3)
A 		42
(3)
A 		3.4
(-3)
A 		6.4
(-2.5)
A 		15
(-1.2)
A 		39
B 6.6
(-1.7)
A 		22.1
(3)
A 		3.9
(-2.5)
A 		4.8
(-2.2)
A 		15.8
(1.1)
A 		2.1
(-3)
A 		20
C 6.1
(-2.3)
A 		40.4
(3)
A 		1.8
(-3)
A 		3.6
(-2.7)
A 		32.8
(1.8)
A 		3.8
(-2.7)
A 		39
avr 11.1
(-1) 		25.7
(3) 		15.9
(0.3) 		3.9
(-3) 		18.3
(1) 		7
(-2.1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.3
(-2.7)
A 		0.6
(-3)
A 		2.4
(-2.2)
A 		13.4
(3)
A 		13
B 2.7
(-1.8)
A 		0.8
(-3)
A 		2.8
(-1.8)
A 		10.6
(3)
A 		10
C 1.1
(-3)
A 		7.8
(-1)
A 		1.8
(-2.8)
A 		21.2
(3)
M 		20
avr 1.7
(-3) 		3.1
(-2.4) 		2.3
(-2.7) 		15.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.8
(-0.9)
A 		5.2
(0.1)
A 		9.2
(3)
A 		0.9
(-3)
A 		1.9
(-2.3)
A 		3.6
(-1)
A 		8
B 2.3
(-1.6)
A 		7.3
(3)
A 		1
(-2.8)
A 		1.3
(-2.5)
A 		6.4
(2.2)
A 		0.8
(-3)
A 		7
C 2.3
(-2.1)
A 		12.3
(3)
A 		0.5
(-3)
A 		0.7
(-2.9)
A 		10.6
(2.1)
A 		1.3
(-2.6)
A 		12
avr 2.8
(-1.5) 		8.3
(3) 		3.6
(-0.9) 		1
(-3) 		6.3
(1.4) 		1.9
(-2.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188928_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14229
Sequence Type Exemplar sequence
Representative Public ID F07B10.3 NCBI
Target Description F07B10.3 /REP_DB=WormBase Gene ID /WP=CE15757 /TR=O17563 /GB=CAB01142.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073460(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073460 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-115) (str-115) mRNA, complete cds. 10/11 None
F07B10.3 ENSEMBL cdna:known chromosome:CEL140:V:11271679:11272952:1 gene:F07B10.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008163 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11271678-11272952(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-115
Ensembl F07B10.3
Entrez Gene 184122 Entrez gene
SwissProt O17563 EMBL-EBI
WormBase CE36479 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03826 Hypothetical protein F07B10.3 [Caenorhabditis elegans] emb|CAB01142.2| Hypothetical protein F07B10.3 [Caenorhabditis elegans] ref|NP_505861.2| Seven TM Receptor family member (str-115) [Caenorhabditis elegans] 0.0
blast CAE75522 Hypothetical protein CBG23540 [Caenorhabditis briggsae] 1.0E-142
blast CAB01141 Hypothetical protein F07B10.2 [Caenorhabditis elegans] ref|NP_505860.1| Seven TM Receptor family member (str-116) [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-15
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505861.2 7 12-34,47-69,92-114,127-149,203-225,246-268,283-305
F07B10.3 7 12-34,47-69,92-114,127-149,203-225,246-268,283-305
Sequence
Target Sequence 
>C. ELEGANS:188928_AT
gatctttttgtcggatgtcacttttatgcttgggtagttttgatcttatcactagccacg
agctggggactcactgcagctttcatgttcccacaaaccgaccgaacaactgaaattttt
ttgcacataatttatagttcatatgacttggagccttattggacagattatgttgcttat
aaatactttgatactgatgagaataatgtgagatgggtcaatgttcttagttttttcggt
gtccttcagcacgggattgtaattgtgagaattttaaaacagactctaagttttggcacc
ctttattattgtggcatcaacacgtatctcaaaataaaaaaacacactggaacatcaaac
agaactcgatgtattcaactacaacttttcagagctctggttgcacagacaattttacca
atgttcatgatgtatattcccgttggtttcatgtttgcatgtccatattttgacttgcaa
ttaggtgcatacaccaattatcaaacagtcatggcacaactttatccgggaatcgaccca
tttgtgatgctgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTTTTGTCGGATGTCACTTTT 105 421 388 Antisense
TTGATCTTATCACTAGCCACGAGCT 179 705 427 Antisense
GAGCTGGGGACTCACTGCAGCTTTC 617 375 447 Antisense
TCCCACAAACCGACCGAACAACTGA 251 597 476 Antisense
TAGTTTTTTCGGTGTCCTTCAGCAC 284 641 615 Antisense
ACAGACTCTAAGTTTTGGCACCCTT 475 107 666 Antisense
GGCACCCTTTATTATTGTGGCATCA 455 535 682 Antisense
CAACTTTTCAGAGCTCTGGTTGCAC 429 189 769 Antisense
ATTCCCGTTGGTTTCATGTTTGCAT 385 9 823 Antisense
ATGGCACAACTTTATCCGGGAATCG 184 53 898 Antisense
GAATCGACCCATTTGTGATGCTGTT 564 329 917 Antisense
Sequence Source Affymetrix Proprietary Database