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[188927_at] tetraspanin

Description C02F5.11 /REP_DB=WormBase Gene ID /WP=CE25750 /GEN=tsp-2 /GB=AAK71354.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 60      6grp_total > 17      4grp_total > 54      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 300.5
(3)
P 		240
(0.6)
P 		252
(1.1)
P 		149.5
(-3)
P 		151
B 344.3
(3)
P 		196.2
(-1.1)
P 		166.4
(-1.9)
P 		125.7
(-3)
P 		219
C 315.2
(3)
P 		150.2
(-2.5)
P 		156.9
(-2.3)
P 		135.3
(-3)
P 		180
avr 320
(3) 		195.5
(-1.1) 		191.8
(-1.2) 		136.8
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 613.6
(3)
P 		264.4
(-3)
P 		353.9
(-1.5)
P 		313
(-2.2)
P 		320.4
(-2)
P 		360.5
(-1.3)
P 		349
B 493.7
(3)
P 		345.8
(-0.5)
P 		338.3
(-0.7)
P 		239.4
(-3)
P 		250.4
(-2.7)
P 		350.9
(-0.4)
P 		254
C 465.7
(3)
P 		329.3
(0.5)
P 		269.4
(-0.6)
P 		417.6
(2.1)
P 		140.6
(-3)
P 		359.1
(1)
P 		325
avr 524.3
(3) 		313.2
(-1.4) 		320.5
(-1.3) 		323.3
(-1.2) 		237.1
(-3) 		356.8
(-0.5) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 109.4
(3)
P 		52.1
(-0.9)
P 		65.9
(0)
P 		21.9
(-3)
P 		88
B 109.8
(3)
P 		48.5
(-1.4)
P 		38.5
(-2.2)
P 		26.8
(-3)
P 		83
C 104.3
(3)
P 		43.2
(-1.5)
P 		54.7
(-0.7)
P 		22.8
(-3)
P 		82
avr 107.8
(3) 		47.9
(-1.3) 		53
(-0.9) 		23.8
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 113.1
(3)
P 		94
(-0.2)
P 		77.1
(-3)
P 		79.4
(-2.6)
P 		96.7
(0.3)
P 		87.8
(-1.2)
P 		36
B 171.8
(3)
P 		115.1
(-0.1)
P 		82.1
(-2)
P 		63.4
(-3)
P 		101.7
(-0.9)
P 		130.9
(0.7)
P 		108
C 172.6
(3)
P 		100.5
(-0.4)
P 		68.6
(-1.9)
P 		84
(-1.2)
P 		45.5
(-3)
P 		120.2
(0.5)
P 		127
avr 152.5
(3) 		103.2
(-0.8) 		75.9
(-3) 		75.6
(-3) 		81.3
(-2.6) 		113
(-0.1) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7004
Sequence Type Exemplar sequence
Representative Public ID C02F5.11 NCBI
Target Description C02F5.11 /REP_DB=WormBase Gene ID /WP=CE25750 /GEN=tsp-2 /GB=AAK71354.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066402 NCBI Caenorhabditis elegans C02F5.11 (tetraspanin) mRNA, complete cds. 11/11 None
SNAP00000031505 ENSEMBL cdna:SNAP chromosome:CEL140:III:8236900:8237789:-1 11/11 None
C02F5.11 ENSEMBL cdna:known chromosome:CEL140:III:8236900:8237789:-1 gene:C02F5.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031517 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8236895-8237785(-) 100.0 100.0
Public Domain and Genome References
Gene Title tetraspanin
Gene Symbol tsp-2
Ensembl C02F5.11
Entrez Gene 259752 Entrez gene
SwissProt Q95QY8 EMBL-EBI
WormBase CE25750 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK71354 Tetraspanin family protein 2 [Caenorhabditis elegans] ref|NP_498803.1| C02F5.11 [Caenorhabditis elegans] 1.0E-118
blast CAE56066 Hypothetical protein CBG23642 [Caenorhabditis briggsae] 2.0E-38
blast CAE56065 Hypothetical protein CBG23641 [Caenorhabditis briggsae] 8.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 2.1E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498803.1 4 7-29,71-93,100-122,190-212
C02F5.11 4 7-29,71-93,100-122,190-212
SNAP00000031505 4 7-29,71-93,100-122,190-212
Sequence
Target Sequence 
>C. ELEGANS:188927_AT
gatatctggggttctctgatggaggataaatcgtatgaacgtgatctcaaagatgtagtt
ttcaattacaattcatctcaacctttggcagatgataaattcgacatgagatcttggatt
tattcagtctactggagcatttacgggctttgcattatagccggtcccctgtccataatt
ggattaattggagcaattagccaaaagaagcctgtactagccacatgtctagttctaata
gtcatattctttataatggagctcggtggaagtattgctctttggtcgaagcgtggaagt
cttcggagtcttctttatcgttttgcaaatgatatttatttgacaaactctgtttttgat
atttccataattcaaaacacgtataattgctgtggagttcaagatgggcaatggaaatgt
ccaaatgctccttcatgtgatattgctctattcaatagtgttgataatacaatgatgatt
tctggaattatcttgattcccgtactgttacttcaaattgtcatcattggtgctgccgtc
ttggttttagtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATCTGGGGTTCTCTGATGGAGG 185 427 94 Antisense
ACAATTCATCTCAACCTTTGGCAGA 42 115 161 Antisense
GGGCTTTGCATTATAGCCGGTCCCC 381 491 238 Antisense
CGGTCCCCTGTCCATAATTGGATTA 163 245 255 Antisense
AAGAAGCCTGTACTAGCCACATGTC 641 151 298 Antisense
GTATTGCTCTTTGGTCGAAGCGTGG 329 453 365 Antisense
AGTCTTCGGAGTCTTCTTTATCGTT 508 61 391 Antisense
ATGTCCAAATGCTCCTTCATGTGAT 447 47 510 Antisense
TATCTTGATTCCCGTACTGTTACTT 14 661 582 Antisense
AAATTGTCATCATTGGTGCTGCCGT 596 115 608 Antisense
GTGCTGCCGTCTTGGTTTTAGTATT 290 471 623 Antisense
Sequence Source Affymetrix Proprietary Database