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[188926_s_at] CD36 family

Description Y49E10.20 /REP_DB=WormBase Gene ID /WP=CE22235 /TR=Q9XTT3 /GB=CAB11566.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=CD36 family
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 65      6grp_total > 75      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 965
1 2 3 4 range
A 1267.6
(3)
P 		638.2
(-3)
P 		664.1
(-2.8)
P 		1156.4
(1.9)
P 		629
B 1307
(1.2)
P 		633.2
(-3)
P 		675.2
(-2.7)
P 		1597.8
(3)
P 		965
C 1265.7
(3)
P 		673.4
(-3)
P 		797.8
(-1.7)
P 		1058.2
(0.9)
P 		592
avr 1280.1
(3) 		648.3
(-3) 		712.4
(-2.4) 		1270.8
(2.9) 		632

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 1026.9
(-2.1)
P 		964.2
(-3)
P 		1263
(1.2)
P 		1390.1
(3)
P 		1029.3
(-2.1)
P 		1383.2
(2.9)
P 		426
B 1243.1
(1.6)
P 		823.2
(-3)
P 		1370.8
(3)
P 		1252.4
(1.7)
P 		1148.4
(0.6)
P 		1339.2
(2.7)
P 		548
C 1085.2
(-1.6)
P 		970.2
(-3)
P 		1212
(-0.1)
P 		1228.5
(0.1)
P 		1326.3
(1.2)
P 		1477.4
(3)
P 		507
avr 1118.4
(-0.5) 		919.2
(-3) 		1281.9
(1.5) 		1290.3
(1.6) 		1168
(0.1) 		1399.9
(3) 		481
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 461.5
(3)
P 		138.5
(-3)
P 		173.6
(-2.3)
P 		169.3
(-2.4)
P 		323
B 416.8
(3)
P 		156.4
(-3)
P 		156.5
(-3)
P 		340.5
(1.2)
P 		260
C 419
(3)
P 		193.6
(-2.6)
P 		278.1
(-0.5)
P 		178.4
(-3)
P 		241
avr 432.4
(3) 		162.8
(-3) 		202.7
(-2.1) 		229.4
(-1.5) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 189.3
(-3)
P 		342.9
(2.6)
P 		275.1
(0.2)
P 		352.6
(3)
P 		310.6
(1.5)
P 		336.8
(2.4)
P 		163
B 432.5
(1.2)
P 		274
(-3)
P 		332.9
(-1.4)
P 		331.7
(-1.5)
P 		466.6
(2.1)
P 		499.4
(3)
P 		225
C 402.2
(0.8)
P 		296
(-1.8)
P 		308.5
(-1.5)
P 		247
(-3)
P 		429.2
(1.4)
P 		494.6
(3)
P 		248
avr 341.3
(-1.4) 		304.3
(-3) 		305.5
(-2.9) 		310.4
(-2.7) 		402.1
(1.2) 		443.6
(3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188926_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6015
Sequence Type Exemplar sequence
Representative Public ID Y49E10.20 NCBI
Target Description Y49E10.20 /REP_DB=WormBase Gene ID /WP=CE22235 /TR=Q9XTT3 /GB=CAB11566.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=CD36 family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067224 NCBI Caenorhabditis elegans Y49E10.20 (Y49E10.20) mRNA, complete cds. 11/11 None
GENEFINDER00000016121 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12446550:12456721:-1 11/11 None
SNAP00000016089 ENSEMBL cdna:SNAP chromosome:CEL140:III:12453601:12454734:-1 11/11 None
Y49E10.20.2 ENSEMBL cdna:known chromosome:CEL140:III:12453483:12456727:-1 gene:Y49E10.20 11/11 None
Y49E10.20.1 ENSEMBL cdna:known chromosome:CEL140:III:12453483:12456725:-1 gene:Y49E10.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12453596-12456717(-) 99.75 100.0
Public Domain and Genome References
Gene Title CD36 family
Ensembl Y49E10.20
Entrez Gene 176673 Entrez gene
SwissProt Q9XTT3 EMBL-EBI
WormBase CE22235 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635522_A_AT dm
DROSGENOME1:152891_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB11566 Hypothetical protein Y49E10.20 [Caenorhabditis elegans] ref|NP_499625.2| Y49E10.20 [Caenorhabditis elegans] 0.0
blast CAE66423 Hypothetical protein CBG11692 [Caenorhabditis briggsae] 0.0
blast CAB11565 Hypothetical protein Y49E10.19 [Caenorhabditis elegans] ref|NP_499624.2| ANIllin (actin binding protein) family member (ani-1) [Caenorhabditis elegans] 0.0
blast CAE66422 Hypothetical protein CBG11691 [Caenorhabditis briggsae] 0.0
blast CAB11566 Hypothetical protein Y49E10.20 [Caenorhabditis elegans] ref|NP_499625.2| Y49E10.20 [Caenorhabditis elegans] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR002159 EMBL-EBI CD36 antigen 4.2E-93
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.8E-9
Pfam IPR002159 EMBL-EBI CD36 antigen 6.0E-44
Pfam IPR002159 EMBL-EBI CD36 antigen 6.6E-95
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499625.2 2 7-29,481-503
Y49E10.20.2 2 7-29,481-503
Y49E10.20.1 2 7-29,481-503
GENEFINDER00000016121 2 10-32,488-510
SNAP00000016089 1 264-286
Sequence
Target Sequence 
>C. ELEGANS:188926_S_AT
gcaaattgaaaactgcctccctgccggtcttatcgacttgtcacgatgccaagccggcaa
tccacgtgtctatctatccaatccacacttctacaactcaccaatggagctgtggcattc
cgtcactgggctctcggtgccaactgcttcaaatgacctgactgttgtagatattgagcc
aactgccggcgttccaactcaagcgaaaagaattatgcagattaatgtgggaatggtcaa
gggatccttgagtgtcaccgaaaacacgacaaacgtcgttgttccagtcctttggatgaa
cgaaactgcgtatttcgatcaaggaactcgtgatcagctgattaatattttcaacgcaaa
acattattcatttattggaggtgttatcagcttgtcacttggtcttatcgcctggcttgc
cgtttttgttgtaatcattgtttattcgcgacaatccgacgaagaagagtacggacgtct
tgtgctggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAATTGAAAACTGCCTCCCTGCC 278 317 1080 Antisense
GGTCTTATCGACTTGTCACGATGCC 156 503 1105 Antisense
TCACGATGCCAAGCCGGCAATCCAC 75 625 1120 Antisense
CAATCCACGTGTCTATCTATCCAAT 526 169 1137 Antisense
CACACTTCTACAACTCACCAATGGA 285 195 1163 Antisense
AGATATTGAGCCAACTGCCGGCGTT 582 65 1248 Antisense
CAAGGGATCCTTGAGTGTCACCGAA 688 183 1317 Antisense
GTCGTTGTTCCAGTCCTTTGGATGA 355 471 1354 Antisense
GTTATCAGCTTGTCACTTGGTCTTA 329 447 1462 Antisense
TGGCTTGCCGTTTTTGTTGTAATCA 605 543 1492 Antisense
AGAGTACGGACGTCTTGTGCTGGAG 710 65 1545 Antisense
Sequence Source Affymetrix Proprietary Database