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[188924_at] 7TM receptor

Description T04A11.9 /REP_DB=WormBase Gene ID /WP=CE13136 /TR=O18020 /GB=CAB05612.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 10      4grp_total > 09      6grp_cgc > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 5.4
(-2.8)
A 		18.1
(3)
A 		5
(-3)
A 		10
(-0.7)
A 		13
B 4.2
(-3)
A 		11.8
(-2.1)
A 		12.1
(-2)
A 		52.2
(3)
A 		48
C 6.4
(-2.8)
A 		3.2
(-3)
A 		7.1
(-2.7)
A 		95.2
(3)
A 		92
avr 5.3
(-3) 		11
(-2.3) 		8.1
(-2.6) 		52.5
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 9
(-2.6)
A 		25.6
(-0.2)
A 		47.2
(3)
A 		6.3
(-3)
A 		6.5
(-3)
A 		7.2
(-2.9)
A 		41
B 3.5
(-3)
A 		15
(-0.6)
A 		10
(-1.6)
A 		4.3
(-2.8)
A 		4.8
(-2.7)
A 		32.3
(3)
A 		29
C 6
(-3)
A 		48.3
(3)
A 		22.6
(-0.6)
A 		10.2
(-2.4)
A 		14.4
(-1.8)
A 		18.3
(-1.3)
A 		42
avr 6.2
(-3) 		29.6
(3) 		26.6
(2.2) 		6.9
(-2.8) 		8.6
(-2.4) 		19.3
(0.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2
(-1.4)
A 		3.9
(3)
A 		1.3
(-3)
A 		1.5
(-2.5)
A 		3
B 1.3
(-3)
A 		2.9
(-2)
A 		2.8
(-2.1)
A 		11.1
(3)
A 		10
C 2.1
(-2.5)
A 		0.9
(-3)
A 		2.5
(-2.4)
A 		16
(3)
A 		15
avr 1.8
(-3) 		2.6
(-2.4) 		2.2
(-2.7) 		9.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		9.1
(2.2)
A 		10.3
(3)
A 		1.6
(-3)
A 		2
(-2.7)
A 		1.8
(-2.9)
A 		9
B 1.2
(-2.9)
A 		5
(-0.9)
A 		2.4
(-2.3)
A 		1.1
(-3)
A 		2
(-2.5)
A 		12
(3)
A 		11
C 2.2
(-2.9)
A 		14.7
(3)
A 		5.8
(-1.2)
A 		2
(-3)
A 		4.7
(-1.7)
A 		6.1
(-1.1)
A 		13
avr 1.7
(-2.9) 		9.6
(3) 		6.2
(0.5) 		1.6
(-3) 		2.9
(-2) 		6.6
(0.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188924_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9406
Sequence Type Exemplar sequence
Representative Public ID T04A11.9 NCBI
Target Description T04A11.9 /REP_DB=WormBase Gene ID /WP=CE13136 /TR=O18020 /GB=CAB05612.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069992(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069992 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-18) (sru-18) mRNA, complete cds. 10/11 None
SNAP00000015164 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12503015:12504026:1 10/11 None
GENEFINDER00000015174 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12498509:12509982:1 9/11 None
T04A11.9 ENSEMBL cdna:known chromosome:CEL140:IV:12502271:12504026:1 gene:T04A11.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12502276-12504032(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol sru-18
Ensembl T04A11.9
Entrez Gene 188047 Entrez gene
SwissProt O18020 EMBL-EBI
WormBase CE34594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05612 Hypothetical protein T04A11.9 [Caenorhabditis elegans] ref|NP_502393.2| Serpentine Receptor, class U family member (sru-18) [Caenorhabditis elegans] 0.0
blast CAB05613 Hypothetical protein T04A11.10 [Caenorhabditis elegans] ref|NP_502394.2| Serpentine Receptor, class U family member (sru-17) [Caenorhabditis elegans] 1.0E-179
blast CAA16355 Hypothetical protein Y45F10B.4 [Caenorhabditis elegans] ref|NP_502616.2| Serpentine Receptor, class U family member (sru-16) [Caenorhabditis elegans] 1.0E-173
blast CAB05610 Hypothetical protein T04A11.7a [Caenorhabditis elegans] ref|NP_001023354.1| Serpentine Receptor, class U family member (sru-20) [Caenorhabditis elegans] 1.0E-139
blast CAI70411 Hypothetical protein T04A11.7b [Caenorhabditis elegans] ref|NP_001023355.1| Serpentine Receptor, class U family member (sru-20) [Caenorhabditis elegans] 1.0E-134
blast CAB05611 Hypothetical protein T04A11.8 [Caenorhabditis elegans] ref|NP_502392.1| Serpentine Receptor, class U family member (sru-19) [Caenorhabditis elegans] 1.0E-132
blast CAB05612 Hypothetical protein T04A11.9 [Caenorhabditis elegans] ref|NP_502393.2| Serpentine Receptor, class U family member (sru-18) [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 6.0E-93
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 4.0E-63
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 2.2E-49
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.5E-65
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.9E-93
Pfam IPR006096 EMBL-EBI Glu/Leu/Phe/Val dehydrogenase, C terminal 5.8E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502393.2 6 26-48,71-93,113-135,156-178,208-227,257-279
T04A11.9 6 26-48,71-93,113-135,156-178,208-227,257-279
SNAP00000015164 3 29-51,80-99,129-151
GENEFINDER00000015174 16 24-46,67-89,117-139,160-178,183-202,250-272,292-310,323-345,375-394,424-446,499-521,542-564,588-610,631-653,711-733,760-782
Sequence
Target Sequence 
>C. ELEGANS:188924_AT
acatctaccctctattctttatattcttcatggttccagcactaggggtctgtcggcaat
tcaagaaaccatatccattcggatcagctttcatacacttttatgggtcttggcacgatg
tgagttcactttatctagataatttttctgtaagattgtattttcagttcaaaaatgctc
catttgaaatgattaatactgttttttggctgatcacttatctactctgcaacttcaagc
ttcatcagaaacttcattatttaaaagtgaactctcagtgccaccagaaccagagtgcaa
gatatcgaagagcggagatctcgttgacattgacttcagtttcaatgatccttacataca
ttgtgaatctagcatttcaggtaattggaataataaagcttggtctcaaaacaatttaca
atttccagggaaccttcctaattgattacaatctcatgacatatagttcattcttccgtc
catatggaaatgatctcgagacttgtgtagttccatgggtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCTACCCTCTATTCTTTATATT 116 107 506 Antisense
TTCATGGTTCCAGCACTAGGGGTCT 474 683 532 Antisense
ACTAGGGGTCTGTCGGCAATTCAAG 486 101 546 Antisense
ATCCATTCGGATCAGCTTTCATACA 421 39 578 Antisense
GGGTCTTGGCACGATGTGAGTTCAC 527 495 610 Antisense
AATACTGTTTTTTGGCTGATCACTT 589 171 700 Antisense
ATCTACTCTGCAACTTCAAGCTTCA 705 31 725 Antisense
TAAAAGTGAACTCTCAGTGCCACCA 20 641 767 Antisense
CAGTGCCACCAGAACCAGAGTGCAA 576 207 781 Antisense
CGGAGATCTCGTTGACATTGACTTC 438 243 818 Antisense
GAGACTTGTGTAGTTCCATGGGTAT 115 393 1003 Antisense
Sequence Source Affymetrix Proprietary Database