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[188923_at] 7TM receptor

Description T06C12.1 /REP_DB=WormBase Gene ID /WP=CE16351 /TR=O18040 /GB=CAB03301.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 43      4grp_total > 24      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 4.7
(-3)
A 		67.9
(1.2)
A 		69.3
(1.3)
A 		94.2
(3)
A 		90
B 10.3
(-3)
A 		27.7
(0.9)
A 		37.1
(3)
A 		23.7
(0)
A 		27
C 25.1
(-1.7)
A 		14.9
(-3)
A 		21
(-2.3)
A 		63.7
(3)
A 		49
avr 13.4
(-3) 		36.8
(-0) 		42.5
(0.7) 		60.5
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 47.6
(3)
A 		4.6
(-2.7)
A 		5.8
(-2.6)
A 		5.2
(-2.7)
A 		41.4
(2.2)
A 		2.7
(-3)
A 		45
B 33.2
(0.4)
A 		33.1
(0.4)
A 		53.2
(3)
A 		34.6
(0.6)
A 		7.2
(-3)
A 		40.2
(1.3)
A 		46
C 22.4
(-1.5)
A 		15.8
(-3)
A 		42.5
(3)
A 		31.8
(0.6)
A 		31.9
(0.6)
A 		20.9
(-1.9)
A 		27
avr 34.4
(3) 		17.8
(-3) 		33.8
(2.8) 		23.9
(-0.8) 		26.8
(0.3) 		21.3
(-1.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.7
(-3)
A 		14.7
(1.8)
A 		18.1
(3)
A 		13.8
(1.4)
A 		16
B 3.3
(-3)
A 		6.8
(1)
A 		8.6
(3)
A 		5.1
(-1)
A 		5
C 8.3
(0.8)
A 		4.3
(-3)
A 		7.3
(-0.2)
A 		10.7
(3)
A 		6
avr 4.4
(-3) 		8.6
(0.7) 		11.3
(3) 		9.9
(1.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.8
(1.1)
A 		1.6
(-2.5)
A 		1.3
(-2.7)
A 		1.3
(-2.7)
A 		12.5
(3)
A 		0.7
(-3)
A 		12
B 11.5
(1.3)
A 		11
(1)
A 		12.9
(2)
A 		9.2
(0.1)
A 		2.9
(-3)
A 		15
(3)
A 		12
C 8.3
(0.5)
A 		4.8
(-3)
A 		10.8
(3)
A 		6.4
(-1.4)
A 		10.3
(2.5)
A 		7
(-0.8)
A 		6
avr 9.5
(3) 		5.8
(-2.7) 		8.3
(1.2) 		5.6
(-3) 		8.6
(1.6) 		7.6
(0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12678
Sequence Type Exemplar sequence
Representative Public ID T06C12.1 NCBI
Target Description T06C12.1 /REP_DB=WormBase Gene ID /WP=CE16351 /TR=O18040 /GB=CAB03301.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074574 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-60) (str-60) mRNA, complete cds. 11/11 None
T06C12.1 ENSEMBL cdna:known chromosome:CEL140:V:15900580:15901999:1 gene:T06C12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035471 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15900579-15901999(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-60
Ensembl T06C12.1
Entrez Gene 188162 Entrez gene
SwissProt O18040 EMBL-EBI
WormBase CE16351 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03301 Hypothetical protein T06C12.1 [Caenorhabditis elegans] ref|NP_506975.1| Seven TM Receptor family member (str-60) [Caenorhabditis elegans] 0.0
blast CAB03407 Hypothetical protein T23F1.4 [Caenorhabditis elegans] ref|NP_506847.1| Seven TM Receptor family member (str-71) [Caenorhabditis elegans] 1.0E-82
blast CAA90737 Hypothetical protein C14H10.4 [Caenorhabditis elegans] ref|NP_509720.1| Seven TM Receptor family member (str-74) [Caenorhabditis elegans] 4.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506975.1 7 10-32,44-61,94-116,129-151,196-218,248-270,285-307
T06C12.1 7 10-32,44-61,94-116,129-151,196-218,248-270,285-307
Sequence
Target Sequence 
>C. ELEGANS:188923_AT
cttgcaccatctgttcattgtatatcgtttttcttttttgtggataaagatgaaaaatct
gatgaatacgtgcgccaagagatgctggacgtctacaatattactattgaaactgcgcct
aaatttgtaataattccatatggttttgataattcgttgaactggaaaggaatttatttt
ttatcaactggaattttcttagtattctttcactattttgttatcttgtattgtgggatc
aaaatgcattttaacatgaaaagcaagcttctccaattttccgaaaaccatggaaaactt
caaaagcagttattcaaagcactagttgctcaaagcctggtacccacgctacttcttgta
atgccagctgcaccagtcattgttagtccgataattgcaccctttatcaataaatttggt
atccagctcagtttgcaaactggttggatgtacgcaatatttgatttctatcctccaatc
gattacattgtttttatgatgattgtgacggaatacaaggttttaataaggaaaatgctc
tcaaaaaccaaagttcagccattggtggtggtcagtatccagaatccaccattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGCACCATCTGTTCATTGTATAT 114 219 427 Antisense
GCGCCAAGAGATGCTGGACGTCTAC 371 287 498 Antisense
AAAAGCAAGCTTCTCCAATTTTCCG 260 129 685 Antisense
CTAGTTGCTCAAAGCCTGGTACCCA 508 217 748 Antisense
CCACGCTACTTCTTGTAATGCCAGC 256 275 770 Antisense
CAGCTGCACCAGTCATTGTTAGTCC 527 203 791 Antisense
TTGTTAGTCCGATAATTGCACCCTT 697 703 806 Antisense
TGGTATCCAGCTCAGTTTGCAAACT 215 551 843 Antisense
ATTTCTATCCTCCAATCGATTACAT 99 17 890 Antisense
AGTTCAGCCATTGGTGGTGGTCAGT 463 63 978 Antisense
GTCAGTATCCAGAATCCACCATTGA 303 467 997 Antisense
Sequence Source Affymetrix Proprietary Database