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[188920_at] neuropeptide

Description E03D2.1 /REP_DB=WormBase Gene ID /WP=CE16958 /TR=O44540 /GB=AAB94166.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=neuropeptide
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 04      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 31      6grp_total > 05      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1242
1 2 3 4 range
A 1670.6
(3)
P 		677.7
(-2.1)
P 		496.1
(-3)
P 		1379.1
(1.5)
P 		1175
B 1738.5
(3)
P 		687.7
(-2.2)
P 		531.3
(-3)
P 		1428.6
(1.5)
P 		1207
C 1691
(3)
P 		792.2
(-1.8)
P 		576.4
(-3)
P 		1462.2
(1.8)
P 		1115
avr 1700
(3) 		719.2
(-2) 		534.6
(-3) 		1423.3
(1.6) 		1165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 974.8
(1.2)
P 		1074.6
(3)
P 		882.5
(-0.4)
P 		794.2
(-2)
P 		835.8
(-1.3)
P 		739.6
(-3)
P 		335
B 1130.3
(3)
P 		1070.8
(2.2)
P 		999.5
(1.2)
P 		769.3
(-1.9)
P 		807.1
(-1.4)
P 		684.6
(-3)
P 		446
C 1344.3
(3)
P 		948.9
(-0.6)
P 		906.6
(-1)
P 		692.8
(-3)
P 		891
(-1.2)
P 		794.9
(-2.1)
P 		652
avr 1149.8
(3) 		1031.4
(1.3) 		929.5
(-0.2) 		752.1
(-2.8) 		844.6
(-1.5) 		739.7
(-3) 		410
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 485
1 2 3 4 range
A 608.3
(3)
P 		147.1
(-2.8)
P 		129.7
(-3)
P 		201.9
(-2.1)
P 		479
B 554.4
(3)
P 		169.8
(-2.4)
P 		123.1
(-3)
P 		304.4
(-0.5)
P 		431
C 559.8
(3)
P 		227.8
(-2.6)
P 		200.9
(-3)
P 		246.5
(-2.2)
P 		359
avr 574.2
(3) 		181.6
(-2.6) 		151.2
(-3) 		250.9
(-1.6) 		423

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 179.7
(-3)
P 		382.2
(3)
P 		192.2
(-2.6)
P 		201.4
(-2.4)
P 		252.2
(-0.9)
P 		180.1
(-3)
P 		203
B 393.3
(3)
P 		356.4
(1.8)
P 		242.7
(-1.8)
P 		203.8
(-3)
P 		327.9
(0.9)
P 		255.3
(-1.4)
P 		190
C 498.3
(3)
P 		289.5
(-0.5)
P 		230.8
(-1.5)
P 		139.3
(-3)
P 		288.3
(-0.5)
P 		266.1
(-0.9)
P 		359
avr 357.1
(3) 		342.7
(2.5) 		221.9
(-1.6) 		181.5
(-3) 		289.5
(0.7) 		233.8
(-1.2) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15482
Sequence Type Exemplar sequence
Representative Public ID E03D2.1 NCBI
Target Description E03D2.1 /REP_DB=WormBase Gene ID /WP=CE16958 /TR=O44540 /GB=AAB94166.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=neuropeptide
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071769 NCBI Caenorhabditis elegans E03D2.1 (neuropeptide) mRNA, complete cds. 11/11 None
SNAP00000024579 ENSEMBL cdna:SNAP chromosome:CEL140:V:4236241:4237546:1 11/11 None
GENEFINDER00000024584 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4236241:4237546:1 10/11 None
E03D2.1 ENSEMBL cdna:known chromosome:CEL140:V:4236232:4237846:1 gene:E03D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4236240-4237546(+) 100.0 100.0
Public Domain and Genome References
Gene Title neuropeptide
Gene Symbol nlp-13
Ensembl E03D2.1
Entrez Gene 178826 Entrez gene
SwissProt O44540 EMBL-EBI
WormBase CE16958 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94166 Neuropeptide-like protein protein 13 [Caenorhabditis elegans] ref|NP_504170.1| E03D2.1 [Caenorhabditis elegans] 2.0E-73
blast AAB94166 Neuropeptide-like protein protein 13 [Caenorhabditis elegans] ref|NP_504170.1| E03D2.1 [Caenorhabditis elegans] 7.0E-70
blast CAE58316 Hypothetical protein CBG01427 [Caenorhabditis briggsae] 1.0E-60
blast CAE58316 Hypothetical protein CBG01427 [Caenorhabditis briggsae] 5.0E-57
blast A25790 FMRFamide neuropeptide precursor - California sea hare 6.0E-10
blast AAQ90311 AF17 C [Ascaris suum] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:188920_AT
gatctcttcagatcttctgcatcatgtccgccatcgcaatggcatacagtcaaggtagtc
gtgacgataatcagagtgcaaagcgcaacgatttctcccgtgacatcatgtcatttggaa
agaggtctggaaacacagccgacttgtatgatcggagaattatggcttttggaaagagac
aaccaagttacgacagagacatcatgtcattcggcaaacgatcggctcccagcgacttct
cgcgagacatcatgagcttcggaaagcgatcctcctctatgtacgaccgtgacatcatgt
cattcggcaaacgttcacccgtcgactacgatcgtccgattatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCTTCAGATCTTCTGCATCAT 552 419 20 Antisense
CATCATGTCCGCCATCGCAATGGCA 1 213 39 Antisense
GAGTGCAAAGCGCAACGATTTCTCC 408 401 93 Antisense
GATTTCTCCCGTGACATCATGTCAT 115 429 109 Antisense
GAGGTCTGGAAACACAGCCGACTTG 264 401 141 Antisense
GAGACATCATGTCATTCGGCAAACG 325 393 215 Antisense
CCAGCGACTTCTCGCGAGACATCAT 532 273 248 Antisense
ATGAGCTTCGGAAAGCGATCCTCCT 654 45 271 Antisense
CTCCTCTATGTACGACCGTGACATC 538 235 291 Antisense
TGACATCATGTCATTCGGCAAACGT 330 571 309 Antisense
CGTCGACTACGATCGTCCGATTATG 207 245 339 Antisense
Sequence Source Affymetrix Proprietary Database