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[188919_at] 7TM receptor

Description C50B6.10 /REP_DB=WormBase Gene ID /WP=CE15727 /TR=P91984 /GB=CAB02859.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 20      4grp_total > 11      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 20.7
(-3)
A 		24
(-2.4)
A 		50.1
(2.6)
P 		52.2
(3)
A 		32
B 52.8
(2.2)
A 		52.1
(2.2)
A 		6.8
(-3)
A 		59.5
(3)
A 		53
C 20.9
(-3)
A 		25.2
(-2.6)
A 		23.3
(-2.8)
A 		87.7
(3)
A 		67
avr 31.5
(-2.3) 		33.8
(-1.9) 		26.7
(-3) 		66.5
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 5.2
(-3)
A 		50.9
(3)
A 		41.8
(1.8)
P 		24.7
(-0.4)
A 		33.8
(0.8)
A 		23.3
(-0.6)
A 		46
B 20.7
(-2.9)
M 		62.5
(3)
P 		59.8
(2.6)
P 		31.7
(-1.4)
A 		28.6
(-1.8)
A 		20.3
(-3)
A 		42
C 23.3
(-1)
A 		53
(3)
P 		23.6
(-1)
A 		48.7
(2.4)
A 		8.5
(-3)
A 		32.5
(0.2)
A 		45
avr 16.4
(-3) 		55.5
(3) 		41.7
(0.9) 		35
(-0.1) 		23.6
(-1.9) 		25.4
(-1.6) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.5
(-1.3)
A 		5.2
(-3)
A 		13.1
(3)
P 		7.6
(-1.2)
A 		8
B 16.9
(3)
A 		12.9
(1.4)
A 		1.6
(-3)
A 		12.7
(1.4)
A 		15
C 6.9
(-3)
A 		7.3
(-2.7)
A 		8.1
(-2.1)
A 		14.8
(3)
A 		8
avr 10.4
(1.1) 		8.5
(-1.7) 		7.6
(-3) 		11.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1
(-3)
A 		18.1
(3)
A 		9.1
(-0.2)
P 		6.3
(-1.1)
A 		10.2
(0.2)
A 		5.7
(-1.4)
A 		17
B 7.2
(-3)
M 		20.8
(3)
P 		14.5
(0.2)
P 		8.4
(-2.5)
A 		11.6
(-1.1)
A 		7.6
(-2.8)
A 		14
C 8.6
(-0.4)
A 		16.2
(3)
P 		6
(-1.6)
A 		9.8
(0.1)
A 		2.8
(-3)
A 		10.9
(0.6)
A 		13
avr 5.6
(-3) 		18.4
(3) 		9.9
(-1) 		8.2
(-1.8) 		8.2
(-1.8) 		8.1
(-1.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188919_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12671
Sequence Type Exemplar sequence
Representative Public ID C50B6.10 NCBI
Target Description C50B6.10 /REP_DB=WormBase Gene ID /WP=CE15727 /TR=P91984 /GB=CAB02859.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073906 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-4) (str-4) mRNA, complete cds. 11/11 None
SNAP00000011271 ENSEMBL cdna:SNAP chromosome:CEL140:V:13340583:13342154:-1 11/11 None
GENEFINDER00000011295 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13340583:13342310:-1 11/11 None
C50B6.10 ENSEMBL cdna:known chromosome:CEL140:V:13340583:13342310:-1 gene:C50B6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13340582-13342310(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-4
Ensembl C50B6.10
Entrez Gene 183637 Entrez gene
SwissProt P91984 EMBL-EBI
WormBase CE15727 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02859 Hypothetical protein C50B6.10 [Caenorhabditis elegans] ref|NP_506307.1| Seven TM Receptor family member (str-4) [Caenorhabditis elegans] 0.0
blast CAB02859 Hypothetical protein C50B6.10 [Caenorhabditis elegans] ref|NP_506307.1| Seven TM Receptor family member (str-4) [Caenorhabditis elegans] 1.0E-162
blast CAE62616 Hypothetical protein CBG06737 [Caenorhabditis briggsae] 1.0E-154
blast CAE62616 Hypothetical protein CBG06737 [Caenorhabditis briggsae] 1.0E-130
blast AAC19248 Seven tm receptor protein 13 [Caenorhabditis elegans] ref|NP_503740.1| Seven TM Receptor family member (str-13) [Caenorhabditis elegans] 4.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.7E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.7E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.7E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.7E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506307.1 7 10-32,45-64,92-114,126-148,200-222,250-272,282-304
C50B6.10 7 10-32,45-64,92-114,126-148,200-222,250-272,282-304
SNAP00000011271 5 40-62,74-96,148-170,198-220,230-252
GENEFINDER00000011295 7 10-32,45-64,92-114,126-148,200-222,250-272,282-304
Sequence
Target Sequence 
>C. ELEGANS:188919_AT
taatataactcgtctcgcctacttttcagctgttgtctacgattcagaatatcatatcag
atggcgaagtgtcatggttatgggtagtgtgtcaaaagttttgtcaattcaatacgcagt
tatgatattttgcggagtccgaatgcatttcaaaatggcagaaaaaatggagcaattctc
aattactaatcggaaaatgcacaaacagcttttcaaaaccctcgttgtacagatcacagt
accaacattcacaatcttcatgccagtcatgttcatgtttttaataccattctttgatct
tcaacttgggattccaacgggagtgttgctgtgtgcattatctttgtatccattcatcga
tgggcttattgttatcagtattgtgtcagattatcgaaaagctgcaattgaagtattccg
ccgaatcctctcccgaataacatgtggccgtttcaaattgcatcaggtgaaaaaatacga
tttctcagttagtggtggcggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATATAACTCGTCTCGCCTACTTT 198 635 540 Antisense
CCTACTTTTCAGCTGTTGTCTACGA 657 267 557 Antisense
AAACCCTCGTTGTACAGATCACAGT 357 125 755 Antisense
AGATCACAGTACCAACATTCACAAT 698 65 770 Antisense
CATTCACAATCTTCATGCCAGTCAT 562 215 785 Antisense
TTAATACCATTCTTTGATCTTCAAC 52 685 820 Antisense
GTGTGCATTATCTTTGTATCCATTC 29 489 870 Antisense
ATTGAAGTATTCCGCCGAATCCTCT 432 5 946 Antisense
ATCCTCTCCCGAATAACATGTGGCC 578 39 964 Antisense
GTGGCCGTTTCAAATTGCATCAGGT 36 493 983 Antisense
GATTTCTCAGTTAGTGGTGGCGGTG 422 427 1018 Antisense
Sequence Source Affymetrix Proprietary Database