[Home] | [Total List]

[188917_s_at]

Description F26H11.3A /REP_DB=WormBase Gene ID /WP=CE15909 /TR=O45410 /GB=CAB04198.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Bromodomain
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 58      6grp_total > 59      4grp_total > 24      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1076
1 2 3 4 range
A 1736.6
(-3)
P 		2042.1
(-0.8)
P 		2483
(2.5)
P 		2555.3
(3)
P 		819
B 1505.7
(-3)
P 		1562.2
(-2.7)
P 		1935.4
(-0.6)
P 		2581.3
(3)
P 		1076
C 1617.3
(-3)
P 		1626.1
(-2.9)
P 		1996.7
(-0)
P 		2378
(3)
P 		761
avr 1619.9
(-3) 		1743.5
(-2.2) 		2138.4
(0.5) 		2504.9
(3) 		885

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1637
1 2 3 4 5 6 range
A 2893
(2)
P 		1764.1
(-2.7)
P 		1682.9
(-3)
P 		1722.7
(-2.8)
P 		2858.2
(1.9)
P 		3132
(3)
P 		1449
B 2678.3
(-0.3)
P 		2142
(-3)
P 		2250.3
(-2.4)
P 		2320.3
(-2.1)
P 		2735.4
(0)
P 		3319.4
(3)
P 		1177
C 2288.8
(-0.3)
P 		2100.8
(-1.2)
P 		1747.8
(-3)
P 		2095.1
(-1.2)
P 		2541.4
(1)
P 		2928.4
(3)
P 		1181
avr 2620
(0.5) 		2002.3
(-2.5) 		1893.7
(-3) 		2046
(-2.3) 		2711.7
(1) 		3126.6
(3) 		1233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 632.3
(2.6)
P 		443.3
(-1.5)
P 		649.1
(3)
P 		374
(-3)
P 		275
B 480.2
(0.4)
P 		385.8
(-3)
P 		448.5
(-0.7)
P 		550.1
(3)
P 		164
C 535.4
(-0.3)
P 		467.5
(-1.6)
P 		695.9
(3)
P 		401
(-3)
P 		295
avr 549.3
(1.2) 		432.2
(-3) 		597.8
(3) 		441.7
(-2.7) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 871
1 2 3 4 5 6 range
A 533.3
(-1)
P 		627.4
(0.2)
P 		366.5
(-3)
P 		436.9
(-2.1)
P 		862.5
(3)
P 		762.6
(1.8)
P 		496
B 931.9
(0.3)
P 		713
(-1.6)
P 		546.4
(-3)
P 		614.6
(-2.4)
P 		1111.4
(1.9)
P 		1237.8
(3)
P 		691
C 848.3
(1.6)
P 		641
(-0.6)
P 		444.8
(-2.7)
P 		421.3
(-3)
P 		822.4
(1.3)
P 		980.3
(3)
P 		559
avr 771.2
(0.5) 		660.5
(-0.7) 		452.6
(-3) 		490.9
(-2.6) 		932.1
(2.3) 		993.6
(3) 		541
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188917_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2778
Sequence Type Exemplar sequence
Representative Public ID F26H11.3A NCBI
Target Description F26H11.3A /REP_DB=WormBase Gene ID /WP=CE15909 /TR=O45410 /GB=CAB04198.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Bromodomain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026946(11), NM_001026947(11), NM_001026948(11), NM_001026949(11), NM_001026950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026946 NCBI Caenorhabditis elegans F26H11.2c (Bromodomain) mRNA, complete cds. 11/11 None
NM_001026947 NCBI Caenorhabditis elegans F26H11.2d (Bromodomain) mRNA, complete cds. 11/11 None
NM_001026948 NCBI Caenorhabditis elegans F26H11.2e (Bromodomain) mRNA, complete cds. 11/11 None
NM_001026949 NCBI Caenorhabditis elegans F26H11.2f (Bromodomain) mRNA, complete cds. 11/11 None
NM_001026950 NCBI Caenorhabditis elegans F26H11.2g (Bromodomain) mRNA, complete cds. 11/11 None
SNAP00000043653 ENSEMBL cdna:SNAP chromosome:CEL140:II:14405435:14407648:1 11/11 None
GENEFINDER00000043662 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14405435:14407648:1 11/11 None
F26H11.2c ENSEMBL cdna:known chromosome:CEL140:II:14390291:14407795:1 gene:F26H11.2 11/11 A 
F26H11.2d.2 ENSEMBL cdna:known chromosome:CEL140:II:14399946:14407648:1 gene:F26H11.2 11/11 None
F26H11.2d.1 ENSEMBL cdna:known chromosome:CEL140:II:14399948:14407648:1 gene:F26H11.2 11/11 None
F26H11.2e ENSEMBL cdna:known chromosome:CEL140:II:14404430:14407648:1 gene:F26H11.2 11/11 None
F26H11.2f ENSEMBL cdna:known chromosome:CEL140:II:14405222:14407648:1 gene:F26H11.2 11/11 None
F26H11.2g ENSEMBL cdna:known chromosome:CEL140:II:14405398:14407648:1 gene:F26H11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175098 7 5 NM_001026946 187818_s_at (11), 188917_s_at (11)
NM_001026947 187818_s_at (11), 188917_s_at (11)
NM_001026948 188917_s_at (11)
NM_001026949 188917_s_at (11)
NM_001026950 188917_s_at (11)
NM_064593 187818_s_at (11)
NM_064594 187818_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14404540-14407645(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26H11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04722 Hypothetical protein F26H11.2c [Caenorhabditis elegans] ref|NP_001022117.1| F26H11.2c [Caenorhabditis elegans] 0.0
blast CAB04197 Hypothetical protein F26H11.2a [Caenorhabditis elegans] ref|NP_496995.2| F26H11.2a [Caenorhabditis elegans] 0.0
blast CAC42289 Hypothetical protein F26H11.2b [Caenorhabditis elegans] ref|NP_496994.2| F26H11.2b [Caenorhabditis elegans] 0.0
blast CAB54234 Hypothetical protein F26H11.2d [Caenorhabditis elegans] ref|NP_001022118.1| F26H11.2d [Caenorhabditis elegans] 0.0
blast CAB04195 Hypothetical protein F26H11.2f [Caenorhabditis elegans] ref|NP_001022120.1| F26H11.2f [Caenorhabditis elegans] 0.0
blast CAB04198 Hypothetical protein F26H11.2e [Caenorhabditis elegans] ref|NP_001022119.1| F26H11.2e [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.8E-15
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 4.3E-18
Pfam IPR001487 EMBL-EBI Bromodomain 5.4E-35
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.0E-5
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.8E-15
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 4.3E-18
Pfam IPR004022 EMBL-EBI DDT domain 4.8E-31
Pfam IPR001487 EMBL-EBI Bromodomain 5.4E-35
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.8E-15
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 4.3E-18
Pfam IPR001487 EMBL-EBI Bromodomain 5.4E-35
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.8E-15
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 4.3E-18
Pfam IPR001487 EMBL-EBI Bromodomain 5.4E-35
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.8E-15
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 4.3E-18
Pfam IPR001487 EMBL-EBI Bromodomain 5.4E-35
Sequence
Target Sequence 
>C. ELEGANS:188917_S_AT
gcgttgggacaacacgtgccgaagccgagcaggccgccgattacaactgcccggcatgca
ctcgagaggctgaaggctacgagtcggaagcgtcagatgtgtcgggttcgagtcgtgtta
gtgtgcaattaacacgcgccgactatactcatgtctttgagctcctcgagcttctcctcg
aacaccgtatgagcacaccattcaggaacccagtagatttgaatgagttcccagattatg
agaaattcatcaagaagcctatggatctctcaacaataacaaaaaaggttgagcgcaccg
aatacctgtatctatcgcaatttgtgaacgacgtgaatcaaatgttcgaaaatgcaaaaa
cctacaatcccaagggcaatgctgtattcaagtgcgccgaaacgatgcaggaagtgttcg
acaaaaagttgatagacgttcgcgagcaaatgaccgcccgtcaacagatgcttcttctag
ctactgctcaacaacaggacccgatgagttctatcagaaagcgtgtccagtcggaaagcc
agcgaactgtcgactcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTTGGGACAACACGTGCCGAAGC 694 289 608 Antisense
AGCGTCAGATGTGTCGGGTTCGAGT 622 81 696 Antisense
ATTAACACGCGCCGACTATACTCAT 570 11 735 Antisense
TACTCATGTCTTTGAGCTCCTCGAG 545 645 753 Antisense
CTTCTCCTCGAACACCGTATGAGCA 689 217 778 Antisense
GAAGCCTATGGATCTCTCAACAATA 199 345 861 Antisense
AGCGCACCGAATACCTGTATCTATC 204 83 899 Antisense
GACGTTCGCGAGCAAATGACCGCCC 233 377 1042 Antisense
TGCTTCTTCTAGCTACTGCTCAACA 15 581 1076 Antisense
AAGCGTGTCCAGTCGGAAAGCCAGC 275 147 1126 Antisense
AAAGCCAGCGAACTGTCGACTCGTT 326 125 1142 Antisense
Sequence Source Affymetrix Proprietary Database