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[188915_at] phospholipase

Description R07B7.8 /REP_DB=WormBase Gene ID /WP=CE06270 /TR=Q21799 /GB=CAB00118.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=phospholipase
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 51      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 90      6grp_total > 41      4grp_total > 52      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 158.6
(3)
P 		157.8
(2.7)
P 		156.8
(2.2)
P 		144.4
(-3)
P 		14
B 177.3
(3)
P 		148.5
(-0.8)
P 		175.9
(2.8)
P 		131.4
(-3)
P 		46
C 158.6
(-1.1)
P 		187.5
(3)
P 		145.3
(-3)
P 		174.9
(1.2)
P 		42
avr 164.8
(3) 		164.6
(2.9) 		159.3
(0.7) 		150.2
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 223.9
(1.5)
P 		155.3
(-0.8)
P 		266.7
(3)
P 		231.8
(1.8)
P 		121.6
(-2)
P 		92.4
(-3)
P 		174
B 158.6
(-1.9)
P 		205.4
(0.3)
P 		263.6
(3)
P 		200.9
(0.1)
P 		194.2
(-0.2)
P 		134.5
(-3)
P 		129
C 142.9
(-2.1)
P 		236.7
(3)
P 		199.4
(1)
P 		218.4
(2)
P 		127.2
(-3)
P 		155
(-1.5)
P 		110
avr 175.1
(-0.5) 		199.1
(0.7) 		243.2
(3) 		217
(1.6) 		147.7
(-1.9) 		127.3
(-3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 57.7
(3)
P 		34.2
(-0.9)
P 		41
(0.3)
P 		21.1
(-3)
P 		37
B 56.5
(3)
P 		36.7
(-1.2)
P 		40.8
(-0.3)
P 		28
(-3)
P 		29
C 52.5
(2.7)
P 		53.9
(3)
P 		50.6
(2.2)
P 		29.5
(-3)
P 		24
avr 55.6
(3) 		41.6
(0.1) 		44.1
(0.7) 		26.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 41.3
(0.1)
P 		55.2
(2.4)
P 		58.1
(2.9)
P 		58.8
(3)
P 		36.7
(-0.7)
P 		22.5
(-3)
P 		36
B 55.2
(-2)
P 		68.4
(0.8)
P 		64
(-0.1)
P 		53.2
(-2.4)
P 		78.9
(3)
P 		50.2
(-3)
P 		29
C 53
(-0.7)
P 		72.2
(3)
P 		50.8
(-1.1)
P 		43.9
(-2.5)
P 		41.2
(-3)
P 		51.9
(-0.9)
P 		31
avr 49.8
(-0.9) 		65.3
(3) 		57.6
(1.1) 		52
(-0.4) 		52.3
(-0.3) 		41.5
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12669
Sequence Type Exemplar sequence
Representative Public ID R07B7.8 NCBI
Target Description R07B7.8 /REP_DB=WormBase Gene ID /WP=CE06270 /TR=Q21799 /GB=CAB00118.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=phospholipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073628(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073628 NCBI Caenorhabditis elegans R07B7.8 (phospholipase) mRNA, complete cds. 11/11 None
GENEFINDER00000027107 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12083866:12085954:-1 11/11 None
R07B7.8 ENSEMBL cdna:known chromosome:CEL140:V:12083866:12085590:-1 gene:R07B7.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027090 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12083865-12085590(-) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase
Ensembl R07B7.8
Entrez Gene 187657 Entrez gene
SwissProt Q21799 EMBL-EBI
WormBase CE06270 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00118 Hypothetical protein R07B7.8 [Caenorhabditis elegans] ref|NP_506029.1| R07B7.8 [Caenorhabditis elegans] 0.0
blast CAB00117 Hypothetical protein R07B7.9 [Caenorhabditis elegans] ref|NP_506028.2| R07B7.9 [Caenorhabditis elegans] 1.0E-146
blast CAE75384 Hypothetical protein CBG23371 [Caenorhabditis briggsae] 1.0E-145
blast CAE75384 Hypothetical protein CBG23371 [Caenorhabditis briggsae] 1.0E-138
blast CAB00117 Hypothetical protein R07B7.9 [Caenorhabditis elegans] ref|NP_506028.2| R07B7.9 [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 6.09999990463257
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 4.0E-9
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 4.0E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027107 1 31-50
Sequence
Target Sequence 
>C. ELEGANS:188915_AT
gactggaaacttgtgtcactctggataggaacaaatgatgtcgggacacttggttaccgt
ctagaagatccaattccagttgatgagtacaaatcacatattgaaaaaggacttttgtat
ttgaaagagaatcttccaagaactattgtcagtatagttggtatgtttccagctcaactt
cttcaggaagcacagtcaattttgaaaaatggaaaacgagcaagaaccgtcgaaaaccag
aaaaaattggatgatttgtctgatgggtacagaaatgtatcttacgattttcaaaataac
gaacattttaattccaatgattttactgtagtcgtgcaaccatttgcaacagaatacacg
gattcttatcgagatgagcatggaaagtacaacccgacattttatgcttcagatctattt
catttgagcaaatttggacatgctgtactcgcgaaacactactggctgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGGAAACTTGTGTCACTCTGGA 458 375 469 Antisense
TGTCGGGACACTTGGTTACCGTCTA 447 471 507 Antisense
GTTACCGTCTAGAAGATCCAATTCC 99 447 521 Antisense
TGTTTCCAGCTCAACTTCTTCAGGA 402 561 632 Antisense
GAGCAAGAACCGTCGAAAACCAGAA 33 391 686 Antisense
TTTACTGTAGTCGTGCAACCATTTG 446 671 790 Antisense
TACACGGATTCTTATCGAGATGAGC 438 643 823 Antisense
GTACAACCCGACATTTTATGCTTCA 121 461 855 Antisense
GCTTCAGATCTATTTCATTTGAGCA 595 305 874 Antisense
TTTGGACATGCTGTACTCGCGAAAC 366 665 901 Antisense
CTCGCGAAACACTACTGGCTGAATC 176 233 916 Antisense
Sequence Source Affymetrix Proprietary Database