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[188914_at] dehydrogenase

Description ZK829.1 /REP_DB=WormBase Gene ID /WP=CE06649 /TR=Q23618 /GB=CAA98083.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_total > 75      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 86.5
(3)
A 		62.1
(-1.7)
A 		82.7
(2.3)
P 		55.2
(-3)
A 		31
B 76.6
(2)
A 		82.3
(3)
P 		77
(2)
A 		49.2
(-3)
A 		33
C 95.5
(1.8)
A 		41.7
(-3)
A 		72.7
(-0.2)
P 		109.2
(3)
M 		68
avr 86.2
(3) 		62
(-3) 		77.5
(0.8) 		71.2
(-0.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 113.1
(-3)
A 		126.7
(-2.4)
P 		235.2
(2.6)
P 		202.7
(1.1)
P 		121.9
(-2.6)
P 		242.9
(3)
P 		130
B 40
(-3)
A 		121.4
(-0.1)
P 		147.9
(0.8)
P 		127.4
(0.1)
P 		210.9
(3)
P 		194.5
(2.4)
P 		171
C 55.4
(-3)
A 		148.5
(-0.1)
P 		160.2
(0.2)
P 		220.7
(2.1)
P 		142.5
(-0.3)
P 		250
(3)
P 		195
avr 69.5
(-3) 		132.2
(-0.6) 		181.1
(1.2) 		183.6
(1.3) 		158.4
(0.3) 		229.1
(3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 31.5
(3)
A 		13.5
(-1.6)
A 		21.6
(0.5)
P 		8.1
(-3)
A 		23
B 24.4
(3)
A 		20.3
(1.2)
P 		17.8
(0.2)
A 		10.5
(-3)
A 		14
C 31.6
(3)
A 		12
(-3)
A 		25.3
(1.1)
P 		18.4
(-1)
M 		20
avr 29.2
(3) 		15.3
(-1.9) 		21.6
(0.3) 		12.3
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 20.8
(-3)
A 		45.1
(0.8)
P 		51.2
(1.8)
P 		51.4
(1.8)
P 		36.8
(-0.5)
P 		59.2
(3)
P 		38
B 13.9
(-3)
A 		40.4
(-0.8)
P 		35.9
(-1.2)
P 		33.8
(-1.3)
P 		85.7
(3)
P 		72.5
(1.9)
P 		72
C 20.5
(-3)
A 		45.3
(-0.6)
P 		40.8
(-1.1)
P 		44.4
(-0.7)
P 		46.1
(-0.6)
P 		83.7
(3)
P 		63
avr 18.4
(-3) 		43.6
(-0.2) 		42.6
(-0.3) 		43.2
(-0.2) 		56.2
(1.2) 		71.8
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188914_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8486
Sequence Type Exemplar sequence
Representative Public ID ZK829.1 NCBI
Target Description ZK829.1 /REP_DB=WormBase Gene ID /WP=CE06649 /TR=Q23618 /GB=CAA98083.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069862 NCBI Caenorhabditis elegans ZK829.1 (dehydrogenase) mRNA, complete cds. 11/11 None
ZK829.1 ENSEMBL cdna:known chromosome:CEL140:IV:11940573:11942355:-1 gene:ZK829.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11940578-11942361(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl ZK829.1
Entrez Gene 191434 Entrez gene
SwissProt Q23618 EMBL-EBI
WormBase CE06649 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98083 Hypothetical protein ZK829.1 [Caenorhabditis elegans] emb|CAA98071.1| Hypothetical protein ZK829.1 [Caenorhabditis elegans] ref|NP_502263.1| ZK829.1 [Caenorhabditis elegans] 1.0E-160
blast CAE62150 Hypothetical protein CBG06196 [Caenorhabditis briggsae] 1.0E-124
blast NP_503752 DeHydrogenases, Short chain family member (dhs-14) [Caenorhabditis elegans] gb|AAF39953.1| Dehydrogenases, short chain protein 14 [Caenorhabditis elegans] 7.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 6.2E-48
Sequence
Target Sequence 
>C. ELEGANS:188914_AT
aaatctgtactaatgctgactcaagctgcaatgcctcatcttataaaaaccaaaggagac
attgtaaatgtgtcaacattcttgtcatctggaccgattggagtgatgtctatgccttat
tacgctgtgccgaaagctgcgttagatcaaatgagcagatccatggctcacgagtatatg
ctgaaaggtgttcggctgaatactgtaaatccgggtcttgtgagcacttctttcttcgcc
agactacccggagtcggagatgataatgcgagaaaaatggagaattatgtgcagagcaag
accgagtatattcctctgggaagggtatgccaggcgtccgatgttgcggagactatatta
tttttggccgacagaaaagtgtctgaatgtatagtcggacaaagtattataatcgatgga
ggttctcgtttatgttgcaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTGTACTAATGCTGACTCAAG 317 117 385 Antisense
TCAAGCTGCAATGCCTCATCTTATA 574 631 405 Antisense
GTCAACATTCTTGTCATCTGGACCG 86 465 456 Antisense
GATTGGAGTGATGTCTATGCCTTAT 387 435 480 Antisense
CTATGCCTTATTACGCTGTGCCGAA 435 223 494 Antisense
CTGTGCCGAAAGCTGCGTTAGATCA 565 239 509 Antisense
TAAATCCGGGTCTTGTGAGCACTTC 40 639 590 Antisense
CGCCAGACTACCCGGAGTCGGAGAT 519 255 621 Antisense
GCAAGACCGAGTATATTCCTCTGGG 383 321 680 Antisense
TATGCCAGGCGTCCGATGTTGCGGA 281 657 710 Antisense
GGAGGTTCTCGTTTATGTTGCAATA 545 515 802 Antisense
Sequence Source Affymetrix Proprietary Database