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[188911_at] 7TM receptor

Description T06C12.2 /REP_DB=WormBase Gene ID /WP=CE16352 /TR=O18041 /GB=CAB03302.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 46      4grp_total > 02      6grp_cgc > 55      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 1
(-3)
A 		1
(-3)
A 		3.1
(-2.8)
A 		76.7
(3)
P 		76
B 3.7
(-2.9)
A 		4
(-2.9)
A 		2.2
(-3)
A 		97.7
(3)
P 		96
C 8.9
(-2.5)
A 		14.5
(-2)
A 		2.6
(-3)
A 		72.7
(3)
P 		70
avr 4.5
(-2.9) 		6.5
(-2.7) 		2.6
(-3) 		82.4
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.8
(3)
A 		2.6
(-1.1)
A 		4.7
(1.6)
A 		1.6
(-2.4)
A 		1.8
(-2.1)
A 		1.1
(-3)
A 		5
B 1.4
(-3)
A 		9.2
(3)
A 		1.8
(-2.7)
A 		4.2
(-0.8)
A 		2.9
(-1.8)
A 		3.5
(-1.4)
A 		8
C 2.4
(-2.4)
A 		6.2
(-0.2)
A 		3.4
(-1.8)
A 		1.4
(-3)
A 		2.8
(-2.2)
A 		11.8
(3)
A 		10
avr 3.2
(-1.7) 		6
(3) 		3.3
(-1.5) 		2.4
(-3) 		2.5
(-2.8) 		5.5
(2.2) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 0.4
(-2.9)
A 		0.2
(-3)
A 		0.8
(-2.7)
A 		11.2
(3)
P 		11
B 1.2
(-2.8)
A 		1
(-2.9)
A 		0.5
(-3)
A 		20.8
(3)
P 		20
C 3
(-1.9)
A 		4.2
(-1.3)
A 		0.9
(-3)
A 		12.3
(3)
P 		11
avr 1.5
(-2.7) 		1.8
(-2.5) 		0.7
(-3) 		14.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.1
(3)
A 		0.9
(1.5)
A 		1
(2.3)
A 		0.4
(-2.3)
A 		0.5
(-1.5)
A 		0.3
(-3)
A 		1
B 0.5
(-2.8)
A 		3
(3)
A 		0.4
(-3)
A 		1.1
(-1.4)
A 		1.2
(-1.2)
A 		1.3
(-0.9)
A 		3
C 0.9
(-2)
A 		1.9
(-0.4)
A 		0.9
(-2)
A 		0.3
(-3)
A 		0.9
(-2)
A 		4
(3)
A 		4
avr 0.8
(-2.1) 		1.9
(3) 		0.8
(-2.1) 		0.6
(-3) 		0.9
(-1.6) 		1.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13624
Sequence Type Exemplar sequence
Representative Public ID T06C12.2 NCBI
Target Description T06C12.2 /REP_DB=WormBase Gene ID /WP=CE16352 /TR=O18041 /GB=CAB03302.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074564 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-57) (str-57) mRNA, complete cds. 11/11 None
SNAP00000035464 ENSEMBL cdna:SNAP chromosome:CEL140:V:15874165:15874909:1 11/11 None
T06C12.2 ENSEMBL cdna:known chromosome:CEL140:V:15873754:15874935:1 gene:T06C12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035477 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15873753-15874935(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-57
Ensembl T06C12.2
Entrez Gene 188163 Entrez gene
SwissProt O18041 EMBL-EBI
WormBase CE16352 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03302 Hypothetical protein T06C12.2 [Caenorhabditis elegans] ref|NP_506965.1| Seven TM Receptor family member (str-57) [Caenorhabditis elegans] 0.0
blast CAB03303 Hypothetical protein T06C12.3 [Caenorhabditis elegans] ref|NP_506966.1| Seven TM Receptor family member (str-56) [Caenorhabditis elegans] 1.0E-157
blast CAB04176 Hypothetical protein F26D2.7 [Caenorhabditis elegans] ref|NP_507149.1| Seven TM Receptor family member (str-55) [Caenorhabditis elegans] 1.0E-138
blast CAB03302 Hypothetical protein T06C12.2 [Caenorhabditis elegans] ref|NP_506965.1| Seven TM Receptor family member (str-57) [Caenorhabditis elegans] 7.0E-96
blast CAB03303 Hypothetical protein T06C12.3 [Caenorhabditis elegans] ref|NP_506966.1| Seven TM Receptor family member (str-56) [Caenorhabditis elegans] 5.0E-72
blast CAB04176 Hypothetical protein F26D2.7 [Caenorhabditis elegans] ref|NP_507149.1| Seven TM Receptor family member (str-55) [Caenorhabditis elegans] 2.0E-64
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506965.1 7 10-32,39-61,89-111,131-153,196-218,245-267,282-304
T06C12.2 7 10-32,39-61,89-111,131-153,196-218,245-267,282-304
SNAP00000035464 3 59-81,108-130,145-167
Sequence
Target Sequence 
>C. ELEGANS:188911_AT
gattcctgcgatatgctactgtgtcgcattttatcaacttctgagaccaaatgatgattc
cgatgagtacctgagaaacattattcgagaaaactatgatcttgaaatttctacagttgc
ccgatacatcttaattccttatagtgataccaatacgctacaatggaaaactctatccct
tttcatagcagcaggaactattatgattattcaatattttattgtaatatttttcggggt
caaattgcacctgagaatgaaggagaagctgaggcaattctctgcgtgccaggtgaaatt
ccaatcgcaaatattcaaagctctcgttactcaaaccgttggtcccaccttattcctggt
tttgccatctgctccgttctttctggcaactctattatcaccttatattgacatggagat
taactggcaaactggatggctatattcttttattggactctatccaatatttgatagtat
cgcattcatattaattgtttccgagtaccgaaaatatgttagaagtaaattattctgcaa
gactaacaagtatcctcgagagtttggcagcaggatttcaattcgcgcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCTGCGATATGCTACTGTGTC 398 433 426 Antisense
GTGTCGCATTTTATCAACTTCTGAG 623 487 446 Antisense
GAAATTTCTACAGTTGCCCGATACA 551 363 529 Antisense
TGCCCGATACATCTTAATTCCTTAT 247 585 543 Antisense
AACTCTATCCCTTTTCATAGCAGCA 592 139 594 Antisense
GAAGCTGAGGCAATTCTCTGCGTGC 438 341 690 Antisense
CTGCGTGCCAGGTGAAATTCCAATC 387 237 707 Antisense
TCAAAGCTCTCGTTACTCAAACCGT 322 629 740 Antisense
CTGGCAACTCTATTATCACCTTATA 639 241 808 Antisense
GTATCCTCGAGAGTTTGGCAGCAGG 135 455 975 Antisense
GCAGCAGGATTTCAATTCGCGCAGT 464 313 992 Antisense
Sequence Source Affymetrix Proprietary Database