[Home] | [Total List]

[188910_s_at] F-box domain.

Description T13F3.5 /REP_DB=WormBase Gene ID /WP=CE16411 /TR=O18085 /GB=CAB07669.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=F-box domain.
Cluster 6grp_total > 90      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 28.4
(0.7)
A 		8.1
(-3)
A 		22.5
(-0.3)
A 		40.7
(3)
A 		33
B 12.6
(-1.7)
A 		14.5
(-1.1)
A 		8.2
(-3)
A 		28
(3)
A 		20
C 14.3
(-1.3)
A 		7.2
(-2.4)
A 		3.5
(-3)
A 		41.4
(3)
A 		38
avr 18.4
(-1.1) 		9.9
(-3) 		11.4
(-2.7) 		36.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 10.9
(0.7)
A 		6.1
(-1.3)
A 		2.3
(-3)
A 		7.8
(-0.6)
A 		16.1
(3)
A 		12.7
(1.5)
A 		14
B 25.1
(3)
A 		7
(-1.8)
A 		2.7
(-3)
A 		4.8
(-2.4)
A 		12.8
(-0.3)
A 		4.1
(-2.6)
A 		22
C 7.2
(-2.8)
A 		17.9
(-1.4)
A 		6.1
(-3)
A 		50.3
(3)
A 		6
(-3)
A 		8.7
(-2.6)
A 		44
avr 14.4
(0.7) 		10.3
(-0.7) 		3.7
(-3) 		21
(3) 		11.6
(-0.3) 		8.5
(-1.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.3
(3)
A 		1.8
(-3)
A 		5.9
(-0.1)
A 		6
(-0)
A 		9
B 4
(0.1)
A 		3.6
(-0.5)
A 		1.9
(-3)
A 		6
(3)
A 		4
C 4.7
(0.6)
A 		2.1
(-2.1)
A 		1.2
(-3)
A 		7
(3)
A 		6
avr 6.3
(3) 		2.5
(-3) 		3
(-2.2) 		6.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2
(-1)
A 		2.2
(-0.7)
A 		0.5
(-3)
A 		2
(-1)
A 		4.9
(3)
A 		3.1
(0.5)
A 		4
B 8.7
(3)
A 		2.3
(-1.8)
A 		0.7
(-3)
A 		1.3
(-2.6)
A 		5.2
(0.4)
A 		1.5
(-2.4)
A 		8
C 2.7
(-2.2)
A 		5.5
(-0.2)
A 		1.6
(-3)
A 		10.1
(3)
A 		1.9
(-2.8)
A 		2.9
(-2.1)
A 		9
avr 4.5
(3) 		3.3
(1) 		0.9
(-3) 		4.5
(3) 		4
(2.2) 		2.5
(-0.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188910_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14504
Sequence Type Exemplar sequence
Representative Public ID T13F3.5 NCBI
Target Description T13F3.5 /REP_DB=WormBase Gene ID /WP=CE16411 /TR=O18085 /GB=CAB07669.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=F-box domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074705 NCBI Caenorhabditis elegans T13F3.5 (T13F3.5) mRNA, complete cds. 11/11 None
GENEFINDER00000028767 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16267680:16272121:-1 11/11 None
T13F3.5 ENSEMBL cdna:known chromosome:CEL140:V:16269348:16272121:-1 gene:T13F3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028753 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16269347-16272121(-) 100.0 100.0
Public Domain and Genome References
Gene Title F-box domain.
Ensembl T13F3.5
Entrez Gene 180091 Entrez gene
SwissProt O18085 EMBL-EBI
WormBase CE16411 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07669 Hypothetical protein T13F3.5 [Caenorhabditis elegans] ref|NP_507106.1| T13F3.5 [Caenorhabditis elegans] 0.0
blast AAC26313 Hypothetical protein T08E11.7 [Caenorhabditis elegans] ref|NP_494084.1| T08E11.7 [Caenorhabditis elegans] 2.0E-68
blast CAB07672 Hypothetical protein T13F3.4 [Caenorhabditis elegans] ref|NP_507105.1| T13F3.4 [Caenorhabditis elegans] 6.0E-68
blast AAC26313 Hypothetical protein T08E11.7 [Caenorhabditis elegans] ref|NP_494084.1| T08E11.7 [Caenorhabditis elegans] 2.0E-67
blast CAB07673 Hypothetical protein T13F3.6 [Caenorhabditis elegans] ref|NP_507107.1| T13F3.6 [Caenorhabditis elegans] 7.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-51
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-51
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 5.6E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507106.1 1 433-452
T13F3.5 1 433-452
GENEFINDER00000028767 1 509-528
Sequence
Target Sequence 
>C. ELEGANS:188910_S_AT
acatgccaaacgtttacgcttgcagttactcttgatgactgtaataatattgcttcagac
ttggacccgatagtcaaatcaataaacgttaccaatcggtatttctggccaccagagata
tacgaaggttacgctgataaatgtgaagaaattataaactgtctagaagcggtgggttct
tcacacttgaaaagtttgacgaccaaaattcgcccttgcctgttttatattttctacaat
cgcgaattttcaacatgtgctgaaaagctgatagccaagaaagacgacaatattccatgt
ctcaacacacttttcaatgatattcacgagccggaagtagatgtatgcgatcaatgggac
aaccttcaaccatgtatcaaggaaaatatcaaaaaattgtgtgatgacaaatcgggaaaa
atccaggaagaatatgtgaagcaggccacaaatttaagaccagaattttgtaacgattat
cagagaatgataatcgcaattttcatgctgtgtttattttttatctgcttttttgttgtg
ctagtacctcgattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGCCAAACGTTTACGCTTGCAG 75 107 823 Antisense
ACGCTTGCAGTTACTCTTGATGACT 60 93 838 Antisense
TTGCTTCAGACTTGGACCCGATAGT 85 703 872 Antisense
TACCAATCGGTATTTCTGGCCACCA 314 651 912 Antisense
AGAAGCGGTGGGTTCTTCACACTTG 99 73 987 Antisense
TTTGACGACCAAAATTCGCCCTTGC 92 667 1017 Antisense
GCCCTTGCCTGTTTTATATTTTCTA 184 287 1034 Antisense
TATTCCATGTCTCAACACACTTTTC 220 665 1113 Antisense
GGGACAACCTTCAACCATGTATCAA 335 493 1178 Antisense
ATTTTTTATCTGCTTTTTTGTTGTG 141 15 1338 Antisense
TTTGTTGTGCTAGTACCTCGATTCA 293 667 1354 Antisense
Sequence Source Affymetrix Proprietary Database