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[188909_at] dehydrogenase

Description C55A6.3 /REP_DB=WormBase Gene ID /WP=CE09000 /TR=P90778 /GB=CAB02863.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      6grp_highest_nonorm > 82      6grp_total > 75      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 272.2
(1.1)
P 		133.1
(-3)
A 		138.3
(-2.8)
A 		334.4
(3)
P 		201
B 184.7
(-1.3)
P 		88
(-3)
A 		134
(-2.2)
A 		432.6
(3)
P 		345
C 224
(-1.1)
P 		181.5
(-2.1)
A 		144.6
(-3)
A 		390.5
(3)
P 		246
avr 227
(-0.8) 		134.2
(-3) 		139
(-2.9) 		385.8
(3) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 186.2
(-3)
P 		267.1
(-1.1)
P 		381.7
(1.6)
P 		378.9
(1.5)
P 		313.4
(-0)
P 		443.5
(3)
P 		257
B 254.5
(-1.5)
P 		182.3
(-3)
P 		347.9
(0.4)
P 		422
(1.9)
P 		298.4
(-0.6)
P 		478.6
(3)
P 		296
C 248.7
(-1.9)
P 		172.9
(-3)
P 		395.8
(0.3)
P 		451.9
(1.2)
P 		312.9
(-0.9)
P 		572.8
(3)
P 		400
avr 229.8
(-2.5) 		207.4
(-3) 		375.1
(0.5) 		417.6
(1.3) 		308.2
(-0.9) 		498.3
(3) 		291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 99.1
(3)
P 		28.9
(-3)
A 		36.2
(-2.4)
A 		48.9
(-1.3)
P 		70
B 58.9
(0.2)
P 		21.7
(-3)
A 		31.1
(-2.2)
A 		92.2
(3)
P 		71
C 74.2
(3)
P 		52.2
(-2.5)
A 		50.4
(-3)
A 		65.8
(0.9)
P 		24
avr 77.4
(3) 		34.3
(-3) 		39.2
(-2.3) 		69
(1.8) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 34.3
(-3)
P 		95
(1.9)
P 		83.1
(1)
P 		96.1
(2)
P 		94.6
(1.9)
P 		108
(3)
P 		74
B 88.5
(-1.6)
P 		60.7
(-3)
P 		84.5
(-1.8)
P 		111.8
(-0.4)
P 		121.2
(0.1)
P 		178.5
(3)
P 		118
C 92.2
(-1.3)
P 		52.8
(-3)
P 		100.7
(-0.9)
P 		90.9
(-1.4)
P 		101.2
(-0.9)
P 		191.8
(3)
P 		139
avr 71.7
(-2.9) 		69.5
(-3) 		89.4
(-1.7) 		99.6
(-1) 		105.7
(-0.6) 		159.4
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13459
Sequence Type Exemplar sequence
Representative Public ID C55A6.3 NCBI
Target Description C55A6.3 /REP_DB=WormBase Gene ID /WP=CE09000 /TR=P90778 /GB=CAB02863.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073518 NCBI Caenorhabditis elegans C55A6.3 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000029771 ENSEMBL cdna:SNAP chromosome:CEL140:V:11513008:11516010:-1 11/11 None
GENEFINDER00000029786 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11514963:11516010:-1 11/11 None
C55A6.3 ENSEMBL cdna:known chromosome:CEL140:V:11515146:11516010:-1 gene:C55A6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11515145-11516010(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl C55A6.3
Entrez Gene 183832 Entrez gene
SwissProt P90778 EMBL-EBI
WormBase CE09000 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02863 Hypothetical protein C55A6.3 [Caenorhabditis elegans] ref|NP_505919.1| C55A6.3 [Caenorhabditis elegans] 1.0E-129
blast CAB02863 Hypothetical protein C55A6.3 [Caenorhabditis elegans] ref|NP_505919.1| C55A6.3 [Caenorhabditis elegans] 1.0E-113
blast CAE75267 Hypothetical protein CBG23230 [Caenorhabditis briggsae] 1.0E-112
blast CAB02866 Hypothetical protein C55A6.6 [Caenorhabditis elegans] ref|NP_505920.1| C55A6.6 [Caenorhabditis elegans] 1.0E-108
blast CAE75267 Hypothetical protein CBG23230 [Caenorhabditis briggsae] 3.0E-96
blast CAE75267 Hypothetical protein CBG23230 [Caenorhabditis briggsae] 2.0E-93
blast CAB02866 Hypothetical protein C55A6.6 [Caenorhabditis elegans] ref|NP_505920.1| C55A6.6 [Caenorhabditis elegans] 1.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.9E-19
Sequence
Target Sequence 
>C. ELEGANS:188909_AT
ctatcaatgatccacgtctgcatgttatcccattggcacttacatgtgataaatcaatgg
acaaatttgtatcaaaagttggtgatatcgttggatcggatggactcaatttacttgtca
ataatgcgggaagtgctgtgaaatattcaaccaaagcagaacccagccgtgccaaacttg
tggagcagttcgacgtgaatactttcagcgtagttattttgagccaaaaactactaccac
ttctcacgaaagcatcatccaaagtgtctggagatgaactttctgtgtcacgtgctgcag
ttgtcacaatctcatctggactcggatcaatcactgagaacacaagtggatctggagtca
tcgaaggtcttgcatacagaatgagcaaatctgcagttaatatgtttgctcgaacatttg
caattgatatgaaagatgattacattttggcagccaacttctgtccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATCAATGATCCACGTCTGCATGT 621 223 203 Antisense
GTCTGCATGTTATCCCATTGGCACT 256 471 218 Antisense
TCAACCAAAGCAGAACCCAGCCGTG 590 631 349 Antisense
CCCAGCCGTGCCAAACTTGTGGAGC 97 259 364 Antisense
GGAGCAGTTCGACGTGAATACTTTC 538 519 384 Antisense
TGAGCCAAAAACTACTACCACTTCT 471 569 422 Antisense
ACCACTTCTCACGAAAGCATCATCC 510 85 438 Antisense
TGAACTTTCTGTGTCACGTGCTGCA 556 573 477 Antisense
CACGTGCTGCAGTTGTCACAATCTC 558 199 491 Antisense
GGAGTCATCGAAGGTCTTGCATACA 492 517 556 Antisense
ATTTTGGCAGCCAACTTCTGTCCAG 689 13 646 Antisense
Sequence Source Affymetrix Proprietary Database