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[188908_s_at]

Description T05A1.6 /REP_DB=WormBase Gene ID /WP=CE03626 /CHR=4 /FEA=Sanger Annotation /DEF=fibrulin like (HINXTON) TR:Q22185 protein_id:CAA92478.1
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 31      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 80      6grp_total > 11      4grp_total > 56      6grp_highest_sub > 02      6grp_cgc > 44      6grp_high1_sub > 03      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 284.7
(-1)
P 		316.7
(0.4)
P 		378.4
(3)
P 		236.7
(-3)
P 		142
B 240.2
(-1.8)
P 		328.7
(0.8)
P 		404.7
(3)
P 		197.1
(-3)
P 		208
C 259
(-1.2)
P 		298.2
(0.2)
P 		377.7
(3)
P 		206.9
(-3)
P 		171
avr 261.3
(-1.3) 		314.5
(0.5) 		386.9
(3) 		213.6
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 265.6
(3)
P 		257.8
(2.5)
P 		265.6
(3)
P 		172.3
(-3)
P 		186.7
(-2.1)
P 		186.6
(-2.1)
P 		93
B 159.5
(-3)
P 		215.6
(2.9)
P 		195.3
(0.8)
P 		200.4
(1.3)
P 		216.5
(3)
P 		207.8
(2.1)
P 		57
C 203.8
(1.8)
P 		211.7
(3)
P 		192.9
(0.2)
P 		181.1
(-1.5)
P 		171.2
(-3)
P 		176.2
(-2.3)
P 		41
avr 209.6
(0.4) 		228.4
(3) 		217.9
(1.6) 		184.6
(-3) 		191.5
(-2.1) 		190.2
(-2.2) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 103.7
(3)
P 		68.7
(-0)
P 		98.9
(2.6)
P 		34.6
(-3)
P 		69
B 76.6
(1)
P 		81.2
(1.5)
P 		93.8
(3)
P 		42
(-3)
P 		52
C 85.7
(0.1)
P 		85.7
(0.1)
P 		131.7
(3)
P 		34.9
(-3)
P 		97
avr 88.7
(1.4) 		78.5
(0.5) 		108.1
(3) 		37.2
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 49
(-2.3)
P 		91.7
(3)
P 		57.8
(-1.2)
P 		43.7
(-3)
P 		56.3
(-1.4)
P 		45.4
(-2.8)
P 		48
B 55.5
(-1.8)
P 		71.8
(0.6)
P 		47.4
(-3)
P 		53.1
(-2.2)
P 		88
(3)
P 		77.5
(1.4)
P 		41
C 75.6
(3)
P 		64.6
(1.3)
P 		49.1
(-1.1)
P 		36.4
(-3)
P 		55.4
(-0.1)
P 		59
(0.5)
P 		39
avr 60
(-0) 		76
(3) 		51.4
(-1.7) 		44.4
(-3) 		66.6
(1.2) 		60.6
(0.1) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188908_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8590
Sequence Type Exemplar sequence
Representative Public ID T05A1.6 NCBI
Target Description T05A1.6 /REP_DB=WormBase Gene ID /WP=CE03626 /CHR=4 /FEA=Sanger Annotation /DEF=fibrulin like (HINXTON) TR:Q22185 protein_id:CAA92478.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028065 NCBI Caenorhabditis elegans FiBuLin family member (fbl-1) (fbl-1) mRNA, complete cds. 11/11 None
SNAP00000033934 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9544153:9545088:1 11/11 None
F56H11.1a ENSEMBL cdna:known chromosome:CEL140:IV:9540829:9545088:1 gene:F56H11.1 11/11 None
F56H11.1c ENSEMBL cdna:known chromosome:CEL140:IV:9540829:9546060:1 gene:F56H11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177788 3 1 NM_001028065 188908_s_at (11)
NM_001028066 175760_at (11)
NM_069293 175760_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9544158-9545094(+) 100.0 100.0
Public Domain and Genome References
Ensembl F56H11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35826 Hypothetical protein F56H11.1a [Caenorhabditis elegans] emb|CAC35817.1| Hypothetical protein F56H11.1a [Caenorhabditis elegans] ref|NP_001023236.1| FiBuLin family member (fbl-1) [Caenorhabditis elegans] dbj|BAD98165.1| fibulin-1C [Caenorhabditis elegans] gb|AAC28323.1| fibulin-1 isoform C precursor [Caenorhabditis elegans] gb|AAC28322.1| fibulin-1 isoform C precursor [Caenorhabditis elegans] 0.0
blast CAE72775 Hypothetical protein CBG20030 [Caenorhabditis briggsae] 0.0
blast CAC35827 Hypothetical protein F56H11.1b [Caenorhabditis elegans] emb|CAC35818.1| Hypothetical protein F56H11.1b [Caenorhabditis elegans] ref|NP_001023237.1| FiBuLin family member (fbl-1) [Caenorhabditis elegans] gb|AAC28324.1| fibulin-1 isoform D precursor [Caenorhabditis elegans] gb|AAC28321.1| fibulin-1 isoform D precursor [Caenorhabditis elegans] 0.0
blast CAA92483 Hypothetical protein F56H11.1c [Caenorhabditis elegans] emb|CAA92962.2| Hypothetical protein F56H11.1c [Caenorhabditis elegans] gb|AAW34127.1| fibulin-1D splice variant [Caenorhabditis elegans] ref|NP_501694.2| FiBuLin family member (fbl-1) [Caenorhabditis elegans] sp|O77469|FBLN1_CAEEL Fibulin-1 precursor 0.0
blast T24484 hypothetical protein T05A1.6 - Caenorhabditis elegans 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 3.5E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 7.9E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 5.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.5E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 7.9E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 5.9E-6
Sequence
Target Sequence 
>C. ELEGANS:188908_S_AT
tgtaatcgtcaaccatcagcatgtggtttgcctgaagaatgttcaaaagtaccattattc
ttaacctatcagtttatttctttggcacgtgctgtacctatttcatctcatcgtcctgca
atcactttgtttaaagtttctgctccaaatcatgcagacactgaagtcaactttgaatta
caattgaagactactatagttggtgctccaaacgttcttccagctattcgagctaatttt
ttacttcaaaaaggtgaaaaacgaaatagtgcagttgtaacacttcgggatagtttggat
ggaccacagacagtgaaattgcaacttttactcagaatgagcaaaaaaggcaaaaacttc
aacacatacgctgccaacctgattgtcgatgtggcagctcacaagcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTAATCGTCAACCATCAGCATGTG 218 557 187 Antisense
GTACCATTATTCTTAACCTATCAGT 40 459 235 Antisense
ACCTATCAGTTTATTTCTTTGGCAC 542 87 250 Antisense
CTTTGGCACGTGCTGTACCTATTTC 673 223 266 Antisense
CATCGTCCTGCAATCACTTTGTTTA 319 211 295 Antisense
TAGTTGGTGCTCCAAACGTTCTTCC 284 643 383 Antisense
AAACGTTCTTCCAGCTATTCGAGCT 198 121 396 Antisense
GTGCAGTTGTAACACTTCGGGATAG 291 481 455 Antisense
AAAACTTCAACACATACGCTGCCAA 368 129 539 Antisense
GCTGCCAACCTGATTGTCGATGTGG 422 297 556 Antisense
GTCGATGTGGCAGCTCACAAGCGAC 90 475 571 Antisense
Sequence Source Affymetrix Proprietary Database