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[188907_at] 7TM receptor

Description R08H2.13 /REP_DB=WormBase Gene ID /WP=CE16305 /TR=O45710 /GB=CAB04640.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 13      4grp_total > 27      6grp_cgc > 50      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 34.1
(-1.2)
A 		68.6
(1.1)
A 		7.9
(-3)
A 		96.1
(3)
P 		88
B 8.6
(-3)
A 		20.8
(3)
A 		9.5
(-2.6)
A 		20.1
(2.7)
A 		12
C 26.9
(3)
A 		21.1
(1.4)
A 		5.7
(-3)
A 		18.2
(0.5)
A 		21
avr 23.2
(-0.5) 		36.8
(1.7) 		7.7
(-3) 		44.8
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 40.5
(3)
A 		1.7
(-3)
A 		6.4
(-2.3)
A 		3.9
(-2.7)
A 		7.3
(-2.1)
A 		4.1
(-2.6)
A 		39
B 13.3
(-1)
A 		6.7
(-2.2)
A 		34.4
(2.7)
A 		8.8
(-1.8)
A 		35.9
(3)
A 		2.2
(-3)
A 		34
C 20.4
(-1.1)
A 		37.1
(0.6)
A 		15.4
(-1.6)
A 		61
(3)
A 		2.1
(-3)
A 		4.3
(-2.8)
A 		59
avr 24.7
(3) 		15.2
(0.3) 		18.7
(1.3) 		24.6
(3) 		15.1
(0.3) 		3.5
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.4
(1.8)
A 		14.9
(3)
A 		2.1
(-3)
A 		14.1
(2.6)
P 		13
B 2.7
(-2)
A 		5.1
(3)
A 		2.2
(-3)
A 		4.3
(1.3)
A 		3
C 8.9
(3)
A 		6.1
(0.6)
A 		2
(-3)
A 		3.1
(-2)
A 		7
avr 8
(2.4) 		8.7
(3) 		2.1
(-3) 		7.2
(1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.5
(3)
A 		0.6
(-3)
A 		1.4
(-2.3)
A 		1
(-2.7)
A 		2.2
(-1.6)
A 		1
(-2.7)
A 		7
B 4.6
(-1.3)
A 		2.2
(-2.4)
A 		8.4
(0.3)
A 		2.3
(-2.3)
A 		14.6
(3)
A 		0.8
(-3)
A 		14
C 7.6
(0.6)
A 		11.3
(2.5)
A 		3.9
(-1.3)
A 		12.3
(3)
A 		0.7
(-3)
A 		1.4
(-2.6)
A 		12
avr 6.6
(3) 		4.7
(0.9) 		4.6
(0.8) 		5.2
(1.5) 		5.8
(2.1) 		1.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14163
Sequence Type Exemplar sequence
Representative Public ID R08H2.13 NCBI
Target Description R08H2.13 /REP_DB=WormBase Gene ID /WP=CE16305 /TR=O45710 /GB=CAB04640.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074421(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074421 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-102) (str-102) mRNA, complete cds. 11/11 None
SNAP00000012527 ENSEMBL cdna:SNAP chromosome:CEL140:V:15388497:15389888:1 11/11 None
GENEFINDER00000012530 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15387619:15389239:1 11/11 None
R08H2.13 ENSEMBL cdna:known chromosome:CEL140:V:15387619:15389239:1 gene:R08H2.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15387618-15389239(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-102
Ensembl R08H2.13
Entrez Gene 187720 Entrez gene
SwissProt O45710 EMBL-EBI
WormBase CE16305 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04640 Hypothetical protein R08H2.13 [Caenorhabditis elegans] ref|NP_506822.1| Seven TM Receptor family member (str-102) [Caenorhabditis elegans] 0.0
blast CAB04640 Hypothetical protein R08H2.13 [Caenorhabditis elegans] ref|NP_506822.1| Seven TM Receptor family member (str-102) [Caenorhabditis elegans] 1.0E-180
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 1.0E-115
blast CAB04640 Hypothetical protein R08H2.13 [Caenorhabditis elegans] ref|NP_506822.1| Seven TM Receptor family member (str-102) [Caenorhabditis elegans] 1.0E-114
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 1.0E-112
blast CAB07344 Hypothetical protein F10A3.6 [Caenorhabditis elegans] ref|NP_507070.1| Seven TM Receptor family member (str-99) [Caenorhabditis elegans] 3.0E-98
blast CAB07344 Hypothetical protein F10A3.6 [Caenorhabditis elegans] ref|NP_507070.1| Seven TM Receptor family member (str-99) [Caenorhabditis elegans] 6.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.8E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.2E-25
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-18
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.9E-10
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.2E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506822.1 7 10-32,45-64,101-123,136-158,206-228,256-278,288-310
R08H2.13 7 10-32,45-64,101-123,136-158,206-228,256-278,288-310
SNAP00000012527 3 31-53,99-121,149-171
GENEFINDER00000012530 7 10-32,45-64,93-115,136-155,203-225,253-275,285-307
Sequence
Target Sequence 
>C. ELEGANS:188907_AT
actctccgatttgggtgttccttatactcttcaactcatccacgtggtttgtactgagct
attttgtcaatggcccaacttcgatgaaagatgaaatcttacaacctgagctgttacaag
cttattgtatgcagcctgaggattacgcgtatgtgggtcctcaatacttttataaagacg
aaggagaaatgaaattccatctcccatcctggattgcttccggcggcatggcattcacta
tgttcatcacaaatactttgctgacatactttggcattgaaacctacagacatcttaaca
aaattggcagcattgccggtattgagtaccgagagcttcagcggcaacttttccgaactt
tggttattcaaacagctatcccaatggtctttatgtacttcccaatttcctgtatgttcc
tgttcccgatattcgggataaaagctgaatcgctggccaatgttgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTCCGATTTGGGTGTTCCTTAT 139 101 419 Antisense
TGTTCCTTATACTCTTCAACTCATC 693 561 434 Antisense
CATCCACGTGGTTTGTACTGAGCTA 544 209 455 Antisense
GCTATTTTGTCAATGGCCCAACTTC 505 303 476 Antisense
GGATTACGCGTATGTGGGTCCTCAA 207 507 558 Antisense
GCGGCATGGCATTCACTATGTTCAT 439 293 641 Antisense
GTACCGAGAGCTTCAGCGGCAACTT 469 457 744 Antisense
TCAAACAGCTATCCCAATGGTCTTT 612 629 786 Antisense
GTACTTCCCAATTTCCTGTATGTTC 348 459 813 Antisense
TATGTTCCTGTTCCCGATATTCGGG 38 655 831 Antisense
GCTGAATCGCTGGCCAATGTTGTTC 25 297 862 Antisense
Sequence Source Affymetrix Proprietary Database