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[188904_s_at]

Description F55F8.2 /REP_DB=WormBase Gene ID /WP=CE11190 /TR=P91340 /GB=AAB37806.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=RNA helicase
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 96      6grp_total > 66      4grp_total > 15      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 598
1 2 3 4 range
A 1334.6
(3)
P 		753.1
(-3)
P 		834.2
(-2.2)
P 		1211.2
(1.7)
P 		582
B 1269.8
(2.4)
P 		823.1
(-3)
P 		828
(-2.9)
P 		1320.2
(3)
P 		497
C 1117.6
(3)
P 		736.6
(-3)
P 		893.2
(-0.5)
P 		1027.9
(1.6)
P 		381
avr 1240.7
(3) 		770.9
(-3) 		851.8
(-2) 		1186.4
(2.3) 		470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 562
1 2 3 4 5 6 range
A 777.5
(-2.3)
P 		786.5
(-2.2)
P 		777
(-2.3)
P 		919.9
(-0.6)
P 		717.7
(-3)
P 		1222
(3)
P 		504
B 660.5
(-3)
P 		815.2
(-0)
P 		837.2
(0.4)
P 		795.1
(-0.4)
P 		737.7
(-1.5)
P 		970
(3)
P 		310
C 661.8
(-3)
P 		807.5
(-1)
P 		806.5
(-1)
P 		940.4
(0.8)
P 		713.3
(-2.3)
P 		1098.9
(3)
P 		437
avr 699.9
(-3) 		803.1
(-1.4) 		806.9
(-1.4) 		885.1
(-0.2) 		722.9
(-2.7) 		1097
(3) 		397
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 485.9
(3)
P 		163.5
(-3)
P 		218.1
(-2)
P 		177.3
(-2.7)
P 		322
B 404.9
(3)
P 		203.3
(-2.7)
P 		191.9
(-3)
P 		281.3
(-0.5)
P 		213
C 370
(3)
P 		211.8
(-1.8)
P 		311.3
(1.2)
P 		173.3
(-3)
P 		197
avr 420.3
(3) 		192.9
(-3) 		240.4
(-1.7) 		210.6
(-2.5) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 143.3
(-3)
P 		279.7
(2.3)
P 		169.2
(-2)
P 		233.3
(0.5)
P 		216.6
(-0.1)
P 		297.5
(3)
P 		154
B 229.8
(-2)
P 		271.3
(-0.4)
P 		203.3
(-3)
P 		210.6
(-2.7)
P 		299.7
(0.7)
P 		361.7
(3)
P 		158
C 245.3
(-1.1)
P 		246.4
(-1.1)
P 		205.3
(-2.5)
P 		189.1
(-3)
P 		230.8
(-1.6)
P 		367.9
(3)
P 		179
avr 206.1
(-2.5) 		265.8
(-0.1) 		192.6
(-3) 		211
(-2.3) 		249
(-0.7) 		342.4
(3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188904_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1301
Sequence Type Exemplar sequence
Representative Public ID F55F8.2 NCBI
Target Description F55F8.2 /REP_DB=WormBase Gene ID /WP=CE11190 /TR=P91340 /GB=AAB37806.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=RNA helicase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059251(11), NM_182038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059251 NCBI Caenorhabditis elegans F55F8.2a (F55F8.2) mRNA, complete cds. 11/11 None
NM_182038 NCBI Caenorhabditis elegans F55F8.2b (F55F8.2) mRNA, complete cds. 11/11 None
SNAP00000024466 ENSEMBL cdna:SNAP chromosome:CEL140:I:5646475:5649652:-1 11/11 None
GENEFINDER00000024482 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5646475:5649652:-1 11/11 None
F55F8.2a ENSEMBL cdna:known chromosome:CEL140:I:5646395:5649659:-1 gene:F55F8.2 11/11 None
F55F8.2b ENSEMBL cdna:known chromosome:CEL140:I:5646475:5649659:-1 gene:F55F8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5646474-5649652(-) 100.0 100.0
Public Domain and Genome References
Ensembl F55F8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37806 Hypothetical protein F55F8.2a [Caenorhabditis elegans] ref|NP_491652.1| F55F8.2a [Caenorhabditis elegans] 0.0
blast AAO38637 Hypothetical protein F55F8.2b [Caenorhabditis elegans] ref|NP_871838.1| F55F8.2b [Caenorhabditis elegans] 0.0
blast CAE68945 Hypothetical protein CBG14925 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 8.8E-29
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 2.3E-65
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 8.8E-29
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 4.7E-63
Sequence
Target Sequence 
>C. ELEGANS:188904_S_AT
agatctgaacgttttcccaatcgactttgaacctttgatgaatgcgatcaagaaacgtgt
gcgactagcttcagagattgactctcttggattccgttgcaaaaagatcaaaatgtcaga
gtcttggtttgaaaaagctgcccgtgccgcagatttagactatgatgagacgcgtcatcg
agaaatggatggattgaatcttgaagttgacacaatggtccagaaaagtcgccaacttca
agcacaactacgcacggagctttcccttccacttccacgtgttgatggatcggattcgat
gaagacaaagtacattactcctgaaattgttgcccgtttgagatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATCTGAACGTTTTCCCAATCGAC 202 65 1701 Antisense
TTCCCAATCGACTTTGAACCTTTGA 253 695 1714 Antisense
GAAACGTGTGCGACTAGCTTCAGAG 11 359 1752 Antisense
GAGATTGACTCTCTTGGATTCCGTT 444 395 1774 Antisense
TGGTTTGAAAAAGCTGCCCGTGCCG 357 549 1825 Antisense
TGCCCGTGCCGCAGATTTAGACTAT 275 583 1839 Antisense
AAGTCGCCAACTTCAAGCACAACTA 279 157 1926 Antisense
AGCACAACTACGCACGGAGCTTTCC 336 75 1941 Antisense
CCTTCCACTTCCACGTGTTGATGGA 82 271 1965 Antisense
ATTACTCCTGAAATTGTTGCCCGTT 174 13 2014 Antisense
GAAATTGTTGCCCGTTTGAGATCAG 554 363 2023 Antisense
Sequence Source Affymetrix Proprietary Database