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[188903_s_at] thioredoxin

Description ZK973.11 /REP_DB=WormBase Gene ID /WP=CE24747 /TR=Q9N4L6 /GB=AAF40013.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=thioredoxin
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 86      6grp_total > 85      4grp_total > 53      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 859
1 2 3 4 range
A 1207.5
(3)
P 		909.7
(0.1)
P 		968.2
(0.7)
P 		594.4
(-3)
P 		613
B 1300.9
(3)
P 		1260.2
(2.6)
P 		718.3
(-3)
P 		767.1
(-2.5)
P 		583
C 1453.2
(3)
P 		1237.4
(1.2)
P 		1054.5
(-0.3)
P 		738.6
(-3)
P 		715
avr 1320.5
(3) 		1135.8
(1.2) 		913.7
(-0.9) 		700
(-3) 		621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 466
1 2 3 4 5 6 range
A 863.7
(-3)
P 		963.6
(-1.2)
P 		878.4
(-2.7)
P 		984.5
(-0.8)
P 		1194.2
(3)
P 		1085.7
(1)
P 		331
B 1033
(-0.1)
P 		928.5
(-2.6)
P 		910.6
(-3)
P 		1079.7
(1)
P 		1067
(0.7)
P 		1164.7
(3)
P 		254
C 1053.3
(-0.2)
P 		833.5
(-3)
P 		1056.3
(-0.1)
P 		1299
(3)
P 		974.5
(-1.2)
P 		1276.2
(2.7)
P 		466
avr 983.3
(-1.3) 		908.5
(-3) 		948.4
(-2.1) 		1121.1
(1.8) 		1078.6
(0.8) 		1175.5
(3) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 439.6
(3)
P 		197.5
(-1.1)
P 		253.1
(-0.2)
P 		87
(-3)
P 		353
B 414.9
(3)
P 		311.2
(0.5)
P 		166.4
(-2.9)
P 		163.5
(-3)
P 		251
C 481
(3)
P 		355.8
(0.9)
P 		367.5
(1.1)
P 		124.5
(-3)
P 		357
avr 445.2
(3) 		288.2
(0.1) 		262.3
(-0.4) 		125
(-3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 159.2
(-3)
P 		342.7
(2.5)
P 		191.3
(-2)
P 		249.7
(-0.3)
P 		360.4
(3)
P 		264.3
(0.1)
P 		201
B 359.4
(0.9)
P 		309
(-0.5)
P 		221.1
(-3)
P 		286
(-1.2)
P 		433.5
(3)
P 		434.3
(3)
P 		213
C 390.4
(1.7)
P 		254.3
(-3)
P 		268.8
(-2.5)
P 		261.2
(-2.8)
P 		315.3
(-0.9)
P 		427.2
(3)
P 		173
avr 303
(0.1) 		302
(0) 		227.1
(-3) 		265.6
(-1.4) 		369.7
(2.8) 		375.3
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188903_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.795
Sequence Type Exemplar sequence
Representative Public ID ZK973.11 NCBI
Target Description ZK973.11 /REP_DB=WormBase Gene ID /WP=CE24747 /TR=Q9N4L6 /GB=AAF40013.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=thioredoxin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058960(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058960 NCBI Caenorhabditis elegans ZK973.11 (thioredoxin) mRNA, complete cds. 10/11 None
SNAP00000023515 ENSEMBL cdna:SNAP chromosome:CEL140:I:4379497:4381771:-1 10/11 None
ZK973.11 ENSEMBL cdna:known chromosome:CEL140:I:4379324:4381899:-1 gene:ZK973.11 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023527 6/11 Cross Hyb Matching Probes None
GENEFINDER00000023522 4/11 Cross Hyb Matching Probes None
ZK973.2 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4379496-4381771(-) 95.67 100.0
Public Domain and Genome References
Gene Title thioredoxin
Ensembl ZK973.11
Entrez Gene 172039 Entrez gene
SwissProt Q9N4L6 EMBL-EBI
WormBase CE29654 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590112_S_AT similar to thioredoxin domain containing 10 cfa
CANINE_2:CFA.580.1.A1_AT similar to thioredoxin domain containing 10 cfa
CANINE_2:CFAAFFX.1033.1.S1_S_AT similar to thioredoxin domain containing 10 cfa
DROSOPHILA_2:1639013_AT dm
DROSGENOME1:154227_AT dm
CHICKEN:GGA.17473.1.S1_S_AT similar to FLJ20793 protein gga
CHICKEN:GGAAFFX.24266.1.S1_AT similar to FLJ20793 protein gga
HG-U95B:48348_AT thioredoxin domain containing 10 hs
HU35KSUBA:R51954_AT thioredoxin domain containing 10 hs
HU35KSUBC:RC_N22084_AT thioredoxin domain containing 10 hs
HU35KSUBD:RC_AA416933_AT thioredoxin domain containing 10 hs
U133_X3P:HS2.96900.1.S1_3P_AT thioredoxin domain containing 10 hs
U133_X3P:HS.96900.0.S1_3P_AT thioredoxin domain containing 10 hs
HG-U133_PLUS_2:1552822_AT thioredoxin domain containing 10 hs
HG-U133_PLUS_2:225302_AT thioredoxin domain containing 10 hs
HG-U133B:225302_AT thioredoxin domain containing 10 hs
HG-U95C:48763_AT thioredoxin domain containing 10 hs
HG-U95C:53878_AT thioredoxin domain containing 10 hs
HG-U95C:58264_AT thioredoxin domain containing 10 hs
HG-U95E:83929_AT thioredoxin domain containing 10 hs
MG-U74BV2:114567_AT thioredoxin domain containing 10 mm
MOE430B:1430995_AT thioredoxin domain containing 10 mm
MOUSE430_2:1430995_AT thioredoxin domain containing 10 mm
MOE430B:1419926_AT Thioredoxin domain containing 10 (Txndc10), mRNA mm
MOUSE430_2:1419926_AT Thioredoxin domain containing 10 (Txndc10), mRNA mm
MU19KSUBC:TC41177_AT Thioredoxin domain containing 10 (Txndc10), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL11490 Hypothetical protein ZK973.11 [Caenorhabditis elegans] ref|NP_491361.1| ZK973.11 [Caenorhabditis elegans] 0.0
blast CAE56279 Hypothetical protein CBG23928 [Caenorhabditis briggsae] 0.0
blast AAH81419 LOC553250 protein [Danio rerio] 9.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 5.6E-32
Sequence
Target Sequence 
>C. ELEGANS:188903_S_AT
aatcgattccaattcgcatggctcgatgggtcggatctggcttctcaaattcaaatggca
gctgtctcggagccacatttgttcattttcaattacaccagttatgaatattatctgagc
gaggatgagccaagtcaaatgacaatcaaatctattctgacatttttggaacagacttca
gaaggaattgataaggaaactattgttgctttcggaggtataattattttctctgaaact
tttctagaaaaccagtccgtcgtgctacaaattgagccaattgatggaatttatctgaaa
atagttttatttcagatgaaacaattggaaaaacgcttgaaagtgtctgaaagtcgtcac
ttgttgacaagaatcaagagaatggctttcgaattgtactggaacattgctcaaatgttc
gcaactcagccacttttatcgtcatgcctgttcggagtaccaatcgcatttctcagcatc
atctgctatagtatttgctccgctgatttcacagtggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGATTCCAATTCGCATGGCTCG 319 169 871 Antisense
ATGGCTCGATGGGTCGGATCTGGCT 42 53 888 Antisense
GGATCTGGCTTCTCAAATTCAAATG 263 511 903 Antisense
CTCGGAGCCACATTTGTTCATTTTC 118 233 936 Antisense
AAACCAGTCCGTCGTGCTACAAATT 509 123 1119 Antisense
GCTCAAATGTTCGCAACTCAGCCAC 607 301 1279 Antisense
AACTCAGCCACTTTTATCGTCATGC 166 141 1293 Antisense
TCGTCATGCCTGTTCGGAGTACCAA 29 605 1309 Antisense
CAATCGCATTTCTCAGCATCATCTG 665 181 1331 Antisense
ATCTGCTATAGTATTTGCTCCGCTG 590 33 1351 Antisense
TGCTCCGCTGATTTCACAGTGGATC 663 581 1366 Antisense
Sequence Source Affymetrix Proprietary Database