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[188902_at] C-type lectin

Description T26E3.1 /REP_DB=WormBase Gene ID /WP=CE14184 /TR=O45829 /GB=CAB04834.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster 6grp_total > 09      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 14.2
(-3)
A 		16.8
(-2.6)
A 		45.8
(1.8)
A 		53.4
(3)
A 		39
B 8.5
(-3)
A 		60.5
(3)
A 		42.7
(0.9)
A 		55
(2.4)
A 		52
C 17.5
(-1.6)
A 		6.9
(-3)
A 		34.8
(0.7)
A 		52.6
(3)
A 		46
avr 13.4
(-3) 		28.1
(-0.8) 		41.1
(1.1) 		53.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 52.7
(3)
A 		24.5
(-0.4)
A 		12.5
(-1.9)
A 		5.1
(-2.7)
A 		34.7
(0.8)
A 		3
(-3)
A 		50
B 21.7
(-0)
A 		3.3
(-3)
A 		16.1
(-0.9)
A 		40.2
(3)
A 		5.2
(-2.7)
A 		4.9
(-2.7)
A 		37
C 34.8
(2.5)
A 		11.1
(-1.6)
A 		37.7
(3)
A 		3.2
(-2.9)
A 		15.2
(-0.9)
A 		2.9
(-3)
A 		35
avr 36.4
(3) 		13
(-1.3) 		22.1
(0.4) 		16.2
(-0.7) 		18.4
(-0.3) 		3.6
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.2
(-1.9)
A 		3.6
(-3)
A 		12
(3)
A 		7.8
(-0)
A 		8
B 2.7
(-3)
A 		15
(3)
A 		9.9
(0.5)
A 		11.7
(1.4)
A 		12
C 5.8
(-0.7)
A 		2
(-3)
A 		12.1
(3)
A 		8.9
(1.1)
A 		10
avr 4.6
(-3) 		6.9
(-0.9) 		11.3
(3) 		9.5
(1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.7
(2.5)
A 		8.7
(1.9)
A 		2.7
(-1.8)
A 		1.3
(-2.6)
A 		10.5
(3)
A 		0.7
(-3)
A 		10
B 7.6
(1.1)
A 		1.1
(-3)
A 		3.9
(-1.2)
A 		10.6
(3)
A 		2.1
(-2.4)
A 		1.8
(-2.6)
A 		10
C 12.9
(3)
A 		3.4
(-1.7)
A 		9.6
(1.4)
A 		0.7
(-3)
A 		4.9
(-0.9)
A 		1
(-2.9)
A 		12
avr 10.1
(3) 		4.4
(-0.8) 		5.4
(-0.2) 		4.2
(-1) 		5.8
(0.1) 		1.2
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.381
Sequence Type Exemplar sequence
Representative Public ID T26E3.1 NCBI
Target Description T26E3.1 /REP_DB=WormBase Gene ID /WP=CE14184 /TR=O45829 /GB=CAB04834.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060809 NCBI Caenorhabditis elegans T26E3.1 (T26E3.1) mRNA, complete cds. 11/11 None
SNAP00000034751 ENSEMBL cdna:SNAP chromosome:CEL140:I:12691371:12692459:1 11/11 None
GENEFINDER00000034757 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12691371:12695463:1 11/11 None
T26E3.1 ENSEMBL cdna:known chromosome:CEL140:I:12691371:12692459:1 gene:T26E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12691301-12692390(+) 96.01 100.0
Public Domain and Genome References
Gene Title C-type lectin
Ensembl T26E3.1
Entrez Gene 188922 Entrez gene
SwissProt O45829 EMBL-EBI
WormBase CE14184 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04834 Hypothetical protein T26E3.1 [Caenorhabditis elegans] ref|NP_493210.1| T26E3.1 [Caenorhabditis elegans] 1.0E-102
blast CAB04834 Hypothetical protein T26E3.1 [Caenorhabditis elegans] ref|NP_493210.1| T26E3.1 [Caenorhabditis elegans] 4.0E-97
blast AAB65898 Hypothetical protein R02F11.2 [Caenorhabditis elegans] ref|NP_504286.3| R02F11.2 [Caenorhabditis elegans] 7.0E-77
blast AAB65898 Hypothetical protein R02F11.2 [Caenorhabditis elegans] ref|NP_504286.3| R02F11.2 [Caenorhabditis elegans] 2.0E-76
blast CAB07603 Hypothetical protein T26E3.9 [Caenorhabditis elegans] emb|CAB04839.2| Hypothetical protein T26E3.9 [Caenorhabditis elegans] ref|NP_493211.2| Serpentine Receptor, class A (alpha) family member (sra-25) [Caenorhabditis elegans] sp|O17847|SRA25_CAEEL Serpentine receptor class alpha-25 (Protein sra-25) 5.0E-68
blast CAB05018 Hypothetical protein ZK39.2 [Caenorhabditis elegans] ref|NP_492868.1| ZK39.2 [Caenorhabditis elegans] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034757 3 254-276,289-311,342-359
Sequence
Target Sequence 
>C. ELEGANS:188902_AT
gtattcggtgcacgtatgactcaagccgatgcacaaatccaatgtcaatcctatggagct
acactttctagtcttcagaacatggaggaagccctgcaaattaacaacatggctctatcc
gtgatcaaagccaacaccggatccgtgtggatcggagccaaaagaaccacggcttgcctc
aaacaatggctatggacaaatggatgcggtagacagaactccttcgcttggactgatggc
tcagcgacaggagttgccggatttgtgtgggacaacttacagccggataacgatgagctc
aagcagccgtgtgcggtgatgctggctgcaagagccgccgttacctggggcggcaaattc
tggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCGGTGCACGTATGACTCAAG 190 453 250 Antisense
TGGAGCTACACTTTCTAGTCTTCAG 161 549 303 Antisense
ACAACATGGCTCTATCCGTGATCAA 59 113 353 Antisense
AGCCAACACCGGATCCGTGTGGATC 28 83 378 Antisense
ACCACGGCTTGCCTCAAACAATGGC 167 85 415 Antisense
GTAGACAGAACTCCTTCGCTTGGAC 450 435 458 Antisense
GATGGCTCAGCGACAGGAGTTGCCG 616 405 484 Antisense
GTGGGACAACTTACAGCCGGATAAC 628 487 516 Antisense
AGCTCAAGCAGCCGTGTGCGGTGAT 674 79 545 Antisense
GGTGATGCTGGCTGCAAGAGCCGCC 680 499 564 Antisense
TACCTGGGGCGGCAAATTCTGGCAA 24 643 591 Antisense
Sequence Source Affymetrix Proprietary Database