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[188899_s_at]

Description C05C10.2 /REP_DB=WormBase Gene ID /WP=CE01466 /CHR=2 /FEA=Sanger Annotation /DEF=NAM7 protein (HINXTON) SW:Q09449 protein_id:CAA88201.1
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 83      6grp_total > 57      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 446.9
(3)
P 		192.4
(-3)
P 		215
(-2.5)
P 		274.9
(-1.1)
P 		255
B 415.6
(3)
P 		223.6
(-3)
P 		268.4
(-1.6)
P 		285.1
(-1.1)
P 		192
C 441.9
(3)
P 		268
(-2.8)
P 		276.7
(-2.5)
P 		262.7
(-3)
P 		179
avr 434.8
(3) 		228
(-3) 		253.4
(-2.3) 		274.2
(-1.7) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 358.7
(-3)
P 		460.6
(-0.4)
P 		417.3
(-1.5)
P 		388.3
(-2.2)
P 		409.3
(-1.7)
P 		590
(3)
P 		231
B 476.2
(1.4)
P 		406.5
(-0.6)
P 		323.5
(-3)
P 		472.8
(1.3)
P 		414.9
(-0.4)
P 		532.8
(3)
P 		209
C 423.6
(-2.5)
P 		534.9
(3)
P 		442
(-1.6)
P 		413.9
(-3)
P 		415.6
(-2.9)
P 		479.7
(0.3)
P 		121
avr 419.5
(-1.9) 		467.3
(0.1) 		394.3
(-3) 		425
(-1.7) 		413.3
(-2.2) 		534.2
(3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 162.7
(3)
P 		41.8
(-2.9)
P 		56.2
(-2.2)
P 		40.2
(-3)
P 		123
B 132.5
(3)
P 		55.2
(-3)
P 		62.2
(-2.5)
P 		60.8
(-2.6)
P 		77
C 146.3
(3)
P 		77
(-1.1)
P 		96.4
(0.1)
P 		44.3
(-3)
P 		102
avr 147.2
(3) 		58
(-2.4) 		71.6
(-1.6) 		48.4
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 66.1
(-3)
P 		163.8
(3)
P 		90.9
(-1.5)
P 		98.5
(-1)
P 		123.5
(0.5)
P 		143.6
(1.8)
P 		98
B 165.7
(1.4)
P 		135.3
(-0.2)
P 		78.6
(-3)
P 		125.2
(-0.7)
P 		168.6
(1.5)
P 		198.7
(3)
P 		120
C 157
(2.5)
P 		163.2
(3)
P 		112.5
(-0.8)
P 		83.2
(-3)
P 		134.5
(0.8)
P 		160.6
(2.8)
P 		80
avr 129.6
(-0.1) 		154.1
(1.9) 		94
(-3) 		102.3
(-2.3) 		142.2
(0.9) 		167.6
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188899_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3231
Sequence Type Exemplar sequence
Representative Public ID C05C10.2 NCBI
Target Description C05C10.2 /REP_DB=WormBase Gene ID /WP=CE01466 /CHR=2 /FEA=Sanger Annotation /DEF=NAM7 protein (HINXTON) SW:Q09449 protein_id:CAA88201.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063740(11), NM_063741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063740 NCBI Caenorhabditis elegans C05C10.2b (C05C10.2) mRNA, complete cds. 11/11 None
NM_063741 NCBI Caenorhabditis elegans C05C10.2a (C05C10.2) mRNA, complete cds. 11/11 None
SNAP00000016011 ENSEMBL cdna:SNAP chromosome:CEL140:II:9922137:9930418:1 11/11 None
GENEFINDER00000016024 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9922137:9930443:1 11/11 None
C05C10.2b.2 ENSEMBL cdna:known chromosome:CEL140:II:9922159:9930903:1 gene:C05C10.2 11/11 None
C05C10.2a ENSEMBL cdna:known chromosome:CEL140:II:9922159:9930741:1 gene:C05C10.2 11/11 None
C05C10.2b.1 ENSEMBL cdna:known chromosome:CEL140:II:9922159:9930593:1 gene:C05C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9922155-9930415(+) 100.0 100.0
Public Domain and Genome References
Ensembl C05C10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42246 Hypothetical protein C05C10.2b [Caenorhabditis elegans] ref|NP_496141.1| C05C10.2b [Caenorhabditis elegans] 0.0
blast CAA88201 Hypothetical protein C05C10.2a [Caenorhabditis elegans] ref|NP_496142.1| C05C10.2a [Caenorhabditis elegans] sp|Q09449|YQ12_CAEEL Hypothetical protein C05C10.2 in chromosome II 0.0
blast CAE57946 Hypothetical protein CBG01003 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188899_S_AT
tcttatcaatgatcctcgcaacccagtcaatccaagtgacattggagtgatctcattcta
cagtgctcaaacttcgattctcactgagcatctacgtggaagcggtgtcaagtgcggtac
ggtcgacgcgttccaaggatctgaaaaggagatcatcatcatgtgcagcacgaacgaacg
gatctcggactttatgcagctaagtaatcgcttgaacgttgcaatgtcccgtgcgaagca
ggtcacaatcattattggtcatttggatggattgagaagagccaattattggagcacaat
tgtgaacaaaattgagcaaaatgggaatttggttaatgcaaatgactggtatcaaaatca
acgaagaaataaggtatcattgtcatcgtatccacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTATCAATGATCCTCGCAACCCA 295 615 4080 Antisense
TGGAGTGATCTCATTCTACAGTGCT 251 549 4122 Antisense
TACAGTGCTCAAACTTCGATTCTCA 134 645 4138 Antisense
GATTCTCACTGAGCATCTACGTGGA 588 431 4155 Antisense
GTCAAGTGCGGTACGGTCGACGCGT 657 461 4186 Antisense
GGTCGACGCGTTCCAAGGATCTGAA 469 501 4200 Antisense
GGAGATCATCATCATGTGCAGCACG 85 519 4227 Antisense
GAACGGATCTCGGACTTTATGCAGC 187 349 4255 Antisense
GCTTGAACGTTGCAATGTCCCGTGC 675 299 4289 Antisense
TGTCCCGTGCGAAGCAGGTCACAAT 485 557 4304 Antisense
GGTATCATTGTCATCGTATCCACTA 631 505 4452 Antisense
Sequence Source Affymetrix Proprietary Database