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[188897_s_at] casein Kinase I

Description R90.1 /REP_DB=WormBase Gene ID /WP=CE06325 /TR=Q22033 /GB=CAA99911.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=casein Kinase I
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 61      4grp_high_8_8 > 26      6grp_highest_nonorm > 41      6grp_total > 04      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 790.1
(3)
P 		613.9
(0)
P 		437.1
(-3)
P 		670.8
(1)
P 		353
B 687.9
(3)
P 		615.2
(0.7)
P 		495.5
(-3)
P 		620.7
(0.9)
P 		192
C 777.4
(3)
P 		596.6
(-1.4)
P 		532.5
(-3)
P 		670.6
(0.4)
P 		245
avr 751.8
(3) 		608.6
(-0.3) 		488.4
(-3) 		654
(0.8) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 394
1 2 3 4 5 6 range
A 862.7
(1.9)
P 		931.6
(3)
P 		655.1
(-1.4)
P 		764.9
(0.4)
P 		635.3
(-1.7)
P 		551.9
(-3)
P 		380
B 910.7
(3)
P 		717.2
(-0.1)
P 		537.5
(-3)
P 		680
(-0.7)
P 		653.9
(-1.1)
P 		656.7
(-1.1)
P 		373
C 794.4
(3)
P 		753.3
(2)
P 		756.8
(2.1)
P 		659.3
(-0.2)
P 		579
(-2)
P 		538.4
(-3)
P 		256
avr 855.9
(3) 		800.7
(1.8) 		649.8
(-1.5) 		701.4
(-0.4) 		622.7
(-2.1) 		582.3
(-3) 		274
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 287.7
(3)
P 		133.3
(-1.9)
P 		114.3
(-2.5)
P 		98.2
(-3)
P 		190
B 219.4
(3)
P 		151.9
(-0.9)
P 		114.8
(-3)
P 		132.3
(-2)
P 		105
C 257.3
(3)
P 		171.5
(-0.6)
P 		185.6
(0)
P 		113.1
(-3)
P 		144
avr 254.8
(3) 		152.2
(-1.4) 		138.2
(-2) 		114.5
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 159
(-2.3)
P 		331.3
(3)
P 		142.7
(-2.7)
P 		194
(-1.2)
P 		191.7
(-1.3)
P 		134.4
(-3)
P 		197
B 316.9
(3)
P 		238.7
(0.5)
P 		130.5
(-3)
P 		180.1
(-1.4)
P 		265.7
(1.4)
P 		244.9
(0.7)
P 		186
C 294.4
(3)
P 		229.8
(0.6)
P 		192.6
(-0.8)
P 		132.6
(-3)
P 		187.4
(-1)
P 		180.2
(-1.2)
P 		162
avr 256.8
(2.5) 		266.6
(3) 		155.3
(-3) 		168.9
(-2.3) 		214.9
(0.2) 		186.5
(-1.3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188897_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12653
Sequence Type Exemplar sequence
Representative Public ID R90.1 NCBI
Target Description R90.1 /REP_DB=WormBase Gene ID /WP=CE06325 /TR=Q22033 /GB=CAA99911.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=casein Kinase I
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073823 NCBI Caenorhabditis elegans R90.1 (R90.1) mRNA, complete cds. 11/11 None
SNAP00000036526 ENSEMBL cdna:SNAP chromosome:CEL140:V:12894368:12898452:-1 11/11 None
GENEFINDER00000036533 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12894368:12898452:-1 11/11 None
R90.1 ENSEMBL cdna:known chromosome:CEL140:V:12894117:12898462:-1 gene:R90.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12894367-12898452(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein Kinase I
Ensembl R90.1
Entrez Gene 179768 Entrez gene
SwissProt Q22033 EMBL-EBI
WormBase CE06325 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99911 Hypothetical protein R90.1 [Caenorhabditis elegans] ref|NP_506224.1| R90.1 [Caenorhabditis elegans] 0.0
blast CAE64723 Hypothetical protein CBG09510 [Caenorhabditis briggsae] 0.0
blast EAA06765 ENSANGP00000017406 [Anopheles gambiae str. PEST] ref|XP_311102.2| ENSANGP00000017406 [Anopheles gambiae str. PEST] 6.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.3E-30
Sequence
Target Sequence 
>C. ELEGANS:188897_S_AT
gcaagttgtggagcacctcaatcaaatagtattattagtcactttaaaggattaataaat
tcatttaacaatcttggagtcggtagtcgattatcaaggacaacctcgattgatgagact
gcgaatcgacaaaatactgccccagtacctgctcatcaataccaaatgaatcatcgaaat
gaggataatagttatggaatgaggcattcaacatcaatgggagttcacaataatagtcag
aatactcaacggattagtgcaactttcaatgcatttgaatcacctgaagaacgagaacgg
agacgagaacggaggatgagaaggagaagtgttgagagcaatggaagggttgaactcgag
actccacctccatcagttcgttctccagttgttgtcaataagtcatctgttgtacatgct
cctgcaagttctcctcctgtcaaaattcgtgataacggaattgatgaagaattccgaatt
ccacttgaagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTTGTGGAGCACCTCAATCAA 417 321 1774 Antisense
TAACAATCTTGGAGTCGGTAGTCGA 66 639 1839 Antisense
GGACAACCTCGATTGATGAGACTGC 435 523 1871 Antisense
GCGAATCGACAAAATACTGCCCCAG 62 289 1894 Antisense
CCAGTACCTGCTCATCAATACCAAA 163 273 1915 Antisense
TACTCAACGGATTAGTGCAACTTTC 246 645 2016 Antisense
AAGGGTTGAACTCGAGACTCCACCT 242 159 2118 Antisense
AAGTCATCTGTTGTACATGCTCCTG 466 157 2173 Antisense
GTTGTACATGCTCCTGCAAGTTCTC 4 439 2182 Antisense
TTCTCCTCCTGTCAAAATTCGTGAT 419 693 2202 Antisense
GAATTCCGAATTCCACTTGAAGAAA 674 323 2242 Antisense
Sequence Source Affymetrix Proprietary Database