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[188895_at] transporter

Description H11E01.2 /REP_DB=WormBase Gene ID /WP=CE17971 /TR=O61803 /GB=AAC17018.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transporter
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 61      6grp_highest_nonorm > 52      6grp_total > 61      4grp_total > 55      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 706
1 2 3 4 range
A 524.3
(3)
P 		264.6
(-0.2)
P 		147.5
(-1.6)
P 		34
(-3)
A 		490
B 739.8
(3)
P 		186.5
(-1.8)
P 		149.2
(-2.2)
P 		52.4
(-3)
A 		687
C 621
(3)
P 		195.6
(-1.8)
P 		136
(-2.4)
P 		85.3
(-3)
A 		536
avr 628.4
(3) 		215.6
(-1.3) 		144.2
(-2.1) 		57.2
(-3) 		571

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 872
1 2 3 4 5 6 range
A 486
(-0.4)
P 		678.4
(1.2)
P 		884.8
(3)
P 		727.1
(1.7)
P 		533.2
(0)
P 		177.8
(-3)
P 		707
B 337
(-2.6)
P 		890.5
(1.8)
P 		686.8
(0.2)
P 		1049.3
(3)
P 		511
(-1.2)
P 		283.8
(-3)
P 		766
C 355.5
(-2)
P 		784.2
(1.6)
P 		861.8
(2.2)
P 		956.8
(3)
P 		541.1
(-0.5)
P 		236.4
(-3)
P 		720
avr 392.8
(-1.6) 		784.4
(1.9) 		811.1
(2.1) 		911.1
(3) 		528.4
(-0.4) 		232.7
(-3) 		678
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 190.9
(3)
P 		57.4
(-1.3)
P 		38.6
(-1.9)
P 		5
(-3)
A 		186
B 235.9
(3)
P 		46.1
(-2.1)
P 		34.6
(-2.4)
P 		11.2
(-3)
A 		225
C 205.6
(3)
P 		56.2
(-1.7)
P 		47.4
(-2)
P 		14.4
(-3)
A 		191
avr 210.8
(3) 		53.2
(-1.7) 		40.2
(-2.1) 		10.2
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 89.6
(-1.6)
P 		241.3
(3)
P 		192.7
(1.5)
P 		184.4
(1.3)
P 		160.9
(0.6)
P 		43.3
(-3)
P 		198
B 117.2
(-2.6)
P 		296.4
(3)
P 		166.8
(-1.1)
P 		277.9
(2.4)
P 		207.6
(0.2)
P 		105.8
(-3)
P 		191
C 131.8
(-1)
P 		239.3
(3)
P 		219.3
(2.3)
P 		192.4
(1.2)
P 		175.1
(0.6)
P 		79.1
(-3)
P 		160
avr 112.9
(-1.8) 		259
(3) 		192.9
(0.8) 		218.2
(1.7) 		181.2
(0.4) 		76.1
(-3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18414
Sequence Type Exemplar sequence
Representative Public ID H11E01.2 NCBI
Target Description H11E01.2 /REP_DB=WormBase Gene ID /WP=CE17971 /TR=O61803 /GB=AAC17018.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075899 NCBI Caenorhabditis elegans H11E01.2 (transporter) mRNA, complete cds. 11/11 None
SNAP00000030750 ENSEMBL cdna:SNAP chromosome:CEL140:X:1621081:1625008:1 10/11 None
H11E01.2 ENSEMBL cdna:known chromosome:CEL140:X:1621476:1625242:1 gene:H11E01.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1621475-1625144(+) 100.0 100.0
Public Domain and Genome References
Gene Title transporter
Ensembl H11E01.2
Entrez Gene 186721 Entrez gene
SwissProt O61803 EMBL-EBI
WormBase CE30441 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17018 Hypothetical protein H11E01.2 [Caenorhabditis elegans] ref|NP_508300.2| H11E01.2 [Caenorhabditis elegans] 0.0
blast CAB60332 Hypothetical protein Y15E3A.4 [Caenorhabditis elegans] ref|NP_510539.1| Y15E3A.4 [Caenorhabditis elegans] 0.0
blast CAE63299 Hypothetical protein CBG07685 [Caenorhabditis briggsae] 0.0
blast CAE63299 Hypothetical protein CBG07685 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508300.2 10 13-35,62-81,88-110,120-142,149-171,181-200,314-333,338-360,373-395,405-427
H11E01.2 10 13-35,62-81,88-110,120-142,149-171,181-200,314-333,338-360,373-395,405-427
SNAP00000030750 8 20-42,74-93,100-122,132-154,161-183,193-212,326-345,350-372
Sequence
Target Sequence 
>C. ELEGANS:188895_AT
gagcccacgttcctcaaagaagttctaggcttcaccgtcaatcacaccggatattttgtc
gcaattccacgggctcttcacttgaccttcaagataatctcgggaatcgctagtgatcga
ataagtttttggacggaaaagtccaaaatgcgaattttcaacacaattgctcttatgggc
tcgggaacgtttttctgcgtactgggctacattccaaaagagcatgcacatctctcattg
gttgctctgataattatcgaatgctctacgggatttatttgcggcggattttataaatgt
gcaactttggtagcgagacaacactcccactttgtcctatctcaaattcaatttatcaaa
tgcctttcacttttcattgagcccctattggtttttctgatatgcacctcaaacactctc
gaagaatggagaattgtttttctaacccatggaattcttctaattgctgggaacattatt
ttctgctacttcgcaacagataggcctgcggatttcacacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCCACGTTCCTCAAAGAAGTTC 112 385 799 Antisense
GAAGTTCTAGGCTTCACCGTCAATC 241 337 817 Antisense
ATATTTTGTCGCAATTCCACGGGCT 603 19 849 Antisense
ACACAATTGCTCTTATGGGCTCGGG 36 111 959 Antisense
GCTCGGGAACGTTTTTCTGCGTACT 584 299 977 Antisense
TTCTGCGTACTGGGCTACATTCCAA 140 695 991 Antisense
TGCACATCTCTCATTGGTTGCTCTG 531 577 1023 Antisense
TTGGTAGCGAGACAACACTCCCACT 419 701 1105 Antisense
ATTGAGCCCCTATTGGTTTTTCTGA 317 5 1174 Antisense
TGCACCTCAAACACTCTCGAAGAAT 368 577 1201 Antisense
AGATAGGCCTGCGGATTTCACACAT 513 65 1296 Antisense
Sequence Source Affymetrix Proprietary Database