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[188894_s_at]

Description D1009.2 /REP_DB=WormBase Gene ID /WP=CE04286 /CHR=X /FEA=Sanger Annotation /DEF=locus:cyp-8 (ST.LOUIS) SW:P52016 protein_id:AAA81696.1
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_high_8_8 > 0      6grp_highest_nonorm > 70      6grp_total > 07      4grp_total > 07      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 342.9
(0.1)
P 		253.3
(-3)
P 		342.3
(0.1)
P 		424.7
(3)
P 		171
B 284.9
(-2.8)
P 		283.5
(-3)
P 		337.1
(3)
P 		295.6
(-1.6)
P 		54
C 345.5
(3)
P 		289
(-3)
M 		289.4
(-3)
P 		299.2
(-1.9)
P 		57
avr 324.4
(1.6) 		275.3
(-3) 		322.9
(1.4) 		339.8
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 381
1 2 3 4 5 6 range
A 376.4
(3)
P 		375.7
(3)
P 		265.6
(-0.8)
P 		269.1
(-0.7)
P 		202
(-3)
P 		370.7
(2.8)
P 		174
B 368.8
(2.8)
P 		294.2
(-0.2)
P 		374.1
(3)
P 		241.4
(-2.4)
P 		226.4
(-3)
P 		237.1
(-2.6)
P 		148
C 582.7
(3)
P 		311.5
(-1.4)
P 		339.8
(-0.9)
P 		309
(-1.4)
P 		209.4
(-3)
P 		313.2
(-1.3)
P 		373
avr 442.6
(3) 		327.1
(-0) 		326.5
(-0) 		273.2
(-1.4) 		212.6
(-3) 		307
(-0.5) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 124.9
(3)
P 		55
(-3)
P 		89.5
(-0)
P 		62.2
(-2.4)
P 		70
B 90.8
(3)
P 		70
(-1.5)
P 		78.1
(0.3)
P 		63
(-3)
P 		28
C 114.4
(3)
P 		83.1
(0.1)
M 		100.9
(1.7)
P 		50.4
(-3)
P 		64
avr 110
(3) 		69.4
(-1.7) 		89.5
(0.6) 		58.5
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 69.4
(-2.1)
P 		133.6
(3)
P 		57.8
(-3)
P 		68.3
(-2.2)
P 		61
(-2.7)
P 		90.2
(-0.4)
P 		76
B 128.3
(3)
P 		97.9
(0.2)
P 		90.8
(-0.5)
P 		63.9
(-3)
P 		92
(-0.4)
P 		88.4
(-0.7)
P 		64
C 216
(3)
P 		95.1
(-1.7)
P 		86.5
(-2)
P 		62.1
(-3)
P 		67.8
(-2.8)
P 		104.8
(-1.3)
P 		154
avr 137.9
(3) 		108.9
(0.6) 		78.4
(-1.9) 		64.8
(-3) 		73.6
(-2.3) 		94.5
(-0.6) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188894_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16996
Sequence Type Exemplar sequence
Representative Public ID D1009.2 NCBI
Target Description D1009.2 /REP_DB=WormBase Gene ID /WP=CE04286 /CHR=X /FEA=Sanger Annotation /DEF=locus:cyp-8 (ST.LOUIS) SW:P52016 protein_id:AAA81696.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077105(11), NM_077106(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077105 NCBI Caenorhabditis elegans CYclophyliN family member (cyn-8) (cyn-8) mRNA, complete cds. 11/11 None
NM_077106 NCBI Caenorhabditis elegans CYclophyliN family member (cyn-8) (cyn-8) mRNA, complete cds. 10/11 None
SNAP00000025060 ENSEMBL cdna:SNAP chromosome:CEL140:X:8911322:8913770:1 10/11 None
GENEFINDER00000025071 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8911322:8913770:1 10/11 None
D1009.2a ENSEMBL cdna:known chromosome:CEL140:X:8911230:8914189:1 gene:D1009.2 11/11 None
D1009.2b ENSEMBL cdna:known chromosome:CEL140:X:8911322:8913770:1 gene:D1009.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8911320-8913769(+) 100.0 100.0
Public Domain and Genome References
Ensembl D1009.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68283 Cyclophilin family protein 8, isoform b [Caenorhabditis elegans] ref|NP_509507.1| CYclophyliN family member (cyn-8) [Caenorhabditis elegans] 1.0E-116
blast AAA81696 Cyclophilin family protein 8, isoform a [Caenorhabditis elegans] ref|NP_509506.1| CYclophyliN family member (cyn-8) [Caenorhabditis elegans] sp|P52016|CYP8_CAEEL Peptidyl-prolyl cis-trans isomerase 8 (PPIase) (Rotamase) (Cyclophilin-8) gb|AAC47130.1| cyclophilin isoform 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 6.7E-96
Sequence
Target Sequence 
>C. ELEGANS:188894_S_AT
tgaagtcgcctaactttgttcacgctccaacaaaagatggcatcaaagttcgcggtcgtg
gaaagctgacattccttggtggaaggaccagatcaacaactccgccgcattggaagcgtg
aagagagcaagaaactcactctcgaagcgcatcaaaaacgtcaagaggaactggaagaac
ggcaaaagcgtgcagctcaacgtgaaaaggaagaagccgaacgcaatgcacgtcttgaga
aggaacgcgtagagcgtcaaaatcaacgtgaacttgagcgtcaaaaacaagaagcagagc
gcgaactgaaacggcagcaggagaacgaagaatctggaaatcgtcgtcgtcgtcgatctt
cgagaagtggctcagaaaatgacgagtcagagcttgaagagccaaagaatcgttcagcat
ctccacgaaaacgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGTCGCCTAACTTTGTTCACGC 453 573 926 Antisense
TGGCATCAAAGTTCGCGGTCGTGGA 230 545 963 Antisense
GAAGGACCAGATCAACAACTCCGCC 631 333 1007 Antisense
ACAACTCCGCCGCATTGGAAGCGTG 246 111 1021 Antisense
AACTCACTCTCGAAGCGCATCAAAA 113 141 1058 Antisense
ACGGCAAAAGCGTGCAGCTCAACGT 81 97 1104 Antisense
GAAGCCGAACGCAATGCACGTCTTG 606 343 1138 Antisense
GAGCGCGAACTGAAACGGCAGCAGG 141 387 1222 Antisense
GAATCTGGAAATCGTCGTCGTCGTC 504 327 1255 Antisense
TCGTCGTCGTCGATCTTCGAGAAGT 107 605 1269 Antisense
GTTCAGCATCTCCACGAAAACGATC 212 445 1337 Antisense
Sequence Source Affymetrix Proprietary Database