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[188892_at] Monooxygenase

Description R07B7.4 /REP_DB=WormBase Gene ID /WP=CE06266 /TR=Q21794 /GB=CAB00113.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Monooxygenase
Cluster 6grp_total > 79      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 123.9
(2.8)
P 		78.6
(-0.3)
A 		38.3
(-3)
A 		127.1
(3)
A 		89
B 113
(3)
P 		68.4
(-3)
A 		79.5
(-1.5)
A 		108.5
(2.4)
A 		45
C 112.9
(1)
A 		61
(-1.3)
A 		19.9
(-3)
A 		161
(3)
P 		141
avr 116.6
(1.9) 		69.3
(-1.4) 		45.9
(-3) 		132.2
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 70.1
(-2.2)
A 		89.4
(-0.4)
A 		78.7
(-1.4)
A 		61.9
(-3)
A 		76.4
(-1.6)
A 		126.2
(3)
P 		64
B 81.1
(0.2)
A 		110.4
(2.2)
A 		90.4
(0.8)
A 		34.6
(-3)
A 		122.4
(3)
A 		82.9
(0.3)
A 		88
C 75.4
(-1.7)
A 		93.8
(0.8)
A 		98.2
(1.3)
A 		67.6
(-2.8)
A 		65.9
(-3)
A 		110.5
(3)
A 		45
avr 75.5
(-0.6) 		97.9
(2) 		89.1
(1) 		54.7
(-3) 		88.2
(0.9) 		106.5
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 45.1
(3)
P 		17.1
(-1.8)
A 		10
(-3)
A 		18.6
(-1.5)
A 		35
B 36
(3)
P 		16.9
(-3)
A 		18.4
(-2.5)
A 		23.1
(-1.1)
A 		19
C 37.4
(3)
A 		17.5
(-0.9)
A 		6.9
(-3)
A 		27.2
(1)
P 		31
avr 39.5
(3) 		17.2
(-1.8) 		11.8
(-3) 		23
(-0.6) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 12.9
(-3)
A 		31.8
(3)
A 		17.1
(-1.7)
A 		15.7
(-2.1)
A 		23.1
(0.2)
A 		30.7
(2.7)
P 		19
B 28.2
(-0.2)
A 		36.7
(1.1)
A 		21.9
(-1.1)
A 		9.2
(-3)
A 		49.7
(3)
A 		30.9
(0.2)
A 		41
C 28
(0.7)
A 		28.6
(0.8)
A 		25
(-0.1)
A 		13.6
(-3)
A 		21.3
(-1)
A 		37
(3)
A 		23
avr 23
(0) 		32.4
(2.9) 		21.3
(-0.5) 		12.8
(-3) 		31.4
(2.6) 		32.9
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14158
Sequence Type Exemplar sequence
Representative Public ID R07B7.4 NCBI
Target Description R07B7.4 /REP_DB=WormBase Gene ID /WP=CE06266 /TR=Q21794 /GB=CAB00113.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Monooxygenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073623(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073623 NCBI Caenorhabditis elegans R07B7.4 (Monooxygenase) mRNA, complete cds. 11/11 None
GENEFINDER00000027105 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12068613:12070545:-1 11/11 None
R07B7.4 ENSEMBL cdna:known chromosome:CEL140:V:12068613:12070545:-1 gene:R07B7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027085 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12068612-12070545(-) 100.0 100.0
Public Domain and Genome References
Gene Title Monooxygenase
Ensembl R07B7.4
Entrez Gene 187655 Entrez gene
SwissProt Q21794 EMBL-EBI
WormBase CE06266 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6725 aromatic compound metabolism inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00113 Hypothetical protein R07B7.4 [Caenorhabditis elegans] ref|NP_506024.1| R07B7.4 [Caenorhabditis elegans] 0.0
blast CAB00114 Hypothetical protein R07B7.5 [Caenorhabditis elegans] ref|NP_506025.1| R07B7.5 [Caenorhabditis elegans] 7.0E-86
blast CAE75381 Hypothetical protein CBG23368 [Caenorhabditis briggsae] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR000733 EMBL-EBI Flavoprotein monooxygenase 3.8E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506024.1 2 376-398,418-440
R07B7.4 2 376-398,418-440
GENEFINDER00000027105 2 376-398,418-440
Sequence
Target Sequence 
>C. ELEGANS:188892_AT
gcagcacatgcaatggttccattcaatggtcaaggtgtcaattgtggatttgaggattgc
cttgtgttgcaggaaattatggatcaatatgaggaagatgaattggaagatgttatcaaa
gagtattcaaaagttagaacaaatgagacgaatatcattaatcaaatggaatgggatgtc
aatttaacgctcacgagttccgtccatggcagcctgggatggattcgagaaatacgtgca
cacataaaactattgttatgcttcattttcccatcatcgttcacattggcagccttctct
cgggagaaatactctgaaattgccagaaaagcacagatcgtcgagaagtgcacatcctta
ttcacaaacgttttcattgttttcataatttctgtcattagcctcttttggtatttactc
ggatactgtagaggaaatcttcaagcatactgtctgcaatgtgccgtcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCACATGCAATGGTTCCATTCA 328 313 907 Antisense
GAGGATTGCCTTGTGTTGCAGGAAA 283 403 958 Antisense
GGGATGTCAATTTAACGCTCACGAG 46 497 1079 Antisense
TCCGTCCATGGCAGCCTGGGATGGA 434 593 1105 Antisense
TTGTTATGCTTCATTTTCCCATCAT 400 707 1159 Antisense
TCCCATCATCGTTCACATTGGCAGC 63 599 1175 Antisense
GGCAGCCTTCTCTCGGGAGAAATAC 422 533 1194 Antisense
AGATCGTCGAGAAGTGCACATCCTT 452 67 1241 Antisense
GCACATCCTTATTCACAAACGTTTT 50 317 1256 Antisense
ATTTCTGTCATTAGCCTCTTTTGGT 159 17 1294 Antisense
ATACTGTCTGCAATGTGCCGTCGTT 443 23 1353 Antisense
Sequence Source Affymetrix Proprietary Database