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[188891_at] dehydrogenase

Description T02E1.4 /REP_DB=WormBase Gene ID /WP=CE13052 /TR=O02290 /GB=CAB04660.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 19      4grp_high_8_8 > 39      6grp_highest_nonorm > 43      6grp_total > 42      4grp_total > 40      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 612
1 2 3 4 range
A 422.5
(-3)
P 		504.1
(-1.9)
P 		861.9
(3)
P 		515.9
(-1.7)
P 		439
B 438.9
(-3)
P 		584
(0.1)
P 		719.8
(3)
P 		623.9
(1)
P 		281
C 455.7
(-3)
P 		689.4
(-0.6)
P 		1034.6
(3)
P 		662.7
(-0.9)
P 		579
avr 439
(-3) 		592.5
(-0.9) 		872.1
(3) 		600.8
(-0.8) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1660
1 2 3 4 5 6 range
A 509.7
(-3)
P 		917.4
(-1.2)
P 		1907.3
(3)
P 		1207.1
(-0)
P 		516.9
(-3)
P 		627.4
(-2.5)
P 		1398
B 1232
(-0.9)
P 		1243.7
(-0.9)
P 		2169.4
(3)
P 		947.8
(-2.1)
P 		1147
(-1.3)
P 		741.6
(-3)
P 		1428
C 1152.2
(0.9)
P 		1360.7
(3)
P 		1145.3
(0.8)
P 		1048.6
(-0.1)
P 		764.8
(-3)
P 		899.9
(-1.6)
P 		596
avr 964.6
(-1.7) 		1173.9
(-0.5) 		1740.7
(3) 		1067.8
(-1.1) 		809.6
(-2.7) 		756.3
(-3) 		984
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 153.8
(0.1)
P 		109.4
(-1.6)
P 		225.3
(3)
P 		75.5
(-3)
P 		150
B 140
(-1.8)
P 		144.2
(-1)
P 		166.8
(3)
P 		133
(-3)
P 		34
C 150.8
(-2.1)
P 		198.2
(-0.9)
P 		360.6
(3)
P 		111.7
(-3)
P 		249
avr 148.2
(-1.3) 		150.6
(-1.2) 		250.9
(3) 		106.7
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 94
(-3)
P 		326.3
(1.3)
P 		415.4
(3)
P 		306.2
(1)
P 		156
(-1.8)
P 		152.8
(-1.9)
P 		321
B 428.7
(0.9)
P 		414
(0.5)
P 		526.8
(3)
P 		251
(-3)
P 		466
(1.7)
P 		276.6
(-2.4)
P 		276
C 427.1
(3)
P 		415.2
(2.7)
P 		291.5
(-0.8)
P 		210.9
(-3)
P 		247.5
(-2)
P 		301.3
(-0.5)
P 		216
avr 316.6
(-0.4) 		385.2
(2.1) 		411.2
(3) 		256
(-2.6) 		289.8
(-1.3) 		243.6
(-3) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1963
Sequence Type Exemplar sequence
Representative Public ID T02E1.4 NCBI
Target Description T02E1.4 /REP_DB=WormBase Gene ID /WP=CE13052 /TR=O02290 /GB=CAB04660.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059839 NCBI Caenorhabditis elegans T02E1.4 (dehydrogenase) mRNA, complete cds. 11/11 None
T02E1.4 ENSEMBL cdna:known chromosome:CEL140:I:8226095:8226412:-1 gene:T02E1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000255 8/11 Cross Hyb Matching Probes None
GENEFINDER00000000264 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8226025-8226343(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl T02E1.4
Entrez Gene 187986 Entrez gene
SwissProt O02290 EMBL-EBI
WormBase CE13052 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04660 Hypothetical protein T02E1.4 [Caenorhabditis elegans] ref|NP_492240.1| T02E1.4 [Caenorhabditis elegans] 7.0E-56
blast CAE60525 Hypothetical protein CBG04146 [Caenorhabditis briggsae] 1.0E-18
blast AAH54138 Zgc:63829 [Danio rerio] ref|NP_999936.1| hypothetical protein LOC406799 [Danio rerio] 5.0E-13
Sequence
Target Sequence 
>C. ELEGANS:188891_AT
atgccatatgtcttcttattatctccacaattagaaattgcttcccaatgggatggctac
tacgaaaagacgttcgaggtatcggatcacgtacacaaggaaataatattaaaagtttca
ggacaaactgtgctgatcactggctccggaagtggattaggccgattgatggccttcgag
ttcggaaaactcggtgcaagattagtgttatgggatataaacgagcaaggaaacaaagaa
acactcaaagaattggaagcgatgggagttgaggtttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCATATGTCTTCTTATTATCTC 454 41 13 Antisense
GTCTTCTTATTATCTCCACAATTAG 320 469 22 Antisense
CTTCCCAATGGGATGGCTACTACGA 229 213 53 Antisense
AAGACGTTCGAGGTATCGGATCACG 188 153 79 Antisense
GAGGTATCGGATCACGTACACAAGG 174 403 88 Antisense
GACAAACTGTGCTGATCACTGGCTC 258 365 134 Antisense
CTGATCACTGGCTCCGGAAGTGGAT 661 237 145 Antisense
GGAAGTGGATTAGGCCGATTGATGG 373 531 160 Antisense
GCCGATTGATGGCCTTCGAGTTCGG 675 283 173 Antisense
GTTCGGAAAACTCGGTGCAAGATTA 677 437 192 Antisense
GAAGCGATGGGAGTTGAGGTTTGGA 382 343 268 Antisense
Sequence Source Affymetrix Proprietary Database