[Home] | [Total List]

[188890_at] troponin C

Description ZK673.7 /REP_DB=WormBase Gene ID /WP=CE01719 /TR=SW:Q09665 /GB=CAA88482.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=troponin C
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 11      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 03      6grp_total > 23      4grp_total > 30      6grp_cgc > 70      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2703
1 2 3 4 range
A 4613.4
(3)
P 		2548
(-1.9)
P 		2102.5
(-3)
P 		3481.7
(0.3)
P 		2511
B 3886.8
(3)
P 		2738.6
(-0.7)
P 		2025.2
(-3)
P 		3819.9
(2.8)
P 		1862
C 4633.4
(3)
P 		2979.7
(-0.7)
P 		1930.7
(-3)
P 		3620
(0.8)
P 		2703
avr 4377.9
(3) 		2755.4
(-1.1) 		2019.5
(-3) 		3640.5
(1.1) 		2358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3544
1 2 3 4 5 6 range
A 4244.7
(3)
P 		3785.7
(2)
P 		3976
(2.4)
P 		3177.7
(0.8)
P 		1733.2
(-2.3)
P 		1381.7
(-3)
P 		2863
B 3941.2
(2.8)
P 		3646.7
(2.2)
P 		4017.6
(3)
P 		2793.7
(0.3)
P 		2042.3
(-1.4)
P 		1300.5
(-3)
P 		2717
C 4844.2
(3)
P 		3488.2
(0.6)
P 		3790.1
(1.1)
P 		3035.1
(-0.2)
P 		2241.4
(-1.6)
P 		1469.9
(-3)
P 		3374
avr 4343.4
(3) 		3640.2
(1.6) 		3927.9
(2.2) 		3002.2
(0.3) 		2005.6
(-1.7) 		1384
(-3) 		2959
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1210
1 2 3 4 range
A 1679.7
(3)
P 		553.1
(-2.8)
P 		549.6
(-2.8)
P 		509.7
(-3)
P 		1170
B 1239.5
(3)
P 		676.4
(-1.4)
P 		469.3
(-3)
P 		814
(-0.3)
P 		770
C 1533.8
(3)
P 		856.7
(-1.4)
P 		672.9
(-2.6)
P 		610.4
(-3)
P 		923
avr 1484.3
(3) 		695.4
(-2.1) 		563.9
(-3) 		644.7
(-2.5) 		920

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1459
1 2 3 4 5 6 range
A 782.5
(-0.3)
P 		1346.4
(3)
P 		865.9
(0.1)
P 		805.9
(-0.2)
P 		523
(-1.9)
P 		336.4
(-3)
P 		1010
B 1371.4
(3)
P 		1213.8
(1.9)
P 		975.6
(0.3)
P 		740
(-1.3)
P 		829.8
(-0.7)
P 		485
(-3)
P 		886
C 1795.5
(3)
P 		1064.4
(-0.4)
P 		964.6
(-0.8)
P 		610.4
(-2.5)
P 		725.3
(-1.9)
P 		492.1
(-3)
P 		1303
avr 1316.5
(3) 		1208.2
(2.3) 		935.4
(0.4) 		718.8
(-1.1) 		692.7
(-1.3) 		437.8
(-3) 		879
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3845
Sequence Type Exemplar sequence
Representative Public ID ZK673.7 NCBI
Target Description ZK673.7 /REP_DB=WormBase Gene ID /WP=CE01719 /TR=SW:Q09665 /GB=CAA88482.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=troponin C
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063850 NCBI Caenorhabditis elegans TropoNin C family member (tnc-2) (tnc-2) mRNA, complete cds. 11/11 None
SNAP00000007632 ENSEMBL cdna:SNAP chromosome:CEL140:II:10466581:10468017:1 11/11 None
GENEFINDER00000007635 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10464780:10468017:1 10/11 None
ZK673.7 ENSEMBL cdna:known chromosome:CEL140:II:10466762:10468254:1 gene:ZK673.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10466922-10468014(+) 99.59 99.59
Public Domain and Genome References
Gene Title troponin C
Gene Symbol tnc-2
Ensembl ZK673.7
Entrez Gene 174612 Entrez gene
SwissProt Q09665 EMBL-EBI
WormBase CE01719 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1631639_AT Troponin C at 47D dm
DROSGENOME1:143622_AT Troponin C at 47D dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
1539 ciliary or flagellar motility inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
9288 flagellum (sensu Bacteria) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88482 Hypothetical protein ZK673.7 [Caenorhabditis elegans] ref|NP_496251.1| TropoNin C family member (tnc-2) [Caenorhabditis elegans] sp|Q09665|TNNC2_CAEEL Troponin C, isoform 2 dbj|BAB84566.1| troponin C [Caenorhabditis elegans] 2.0E-75
blast CAA88482 Hypothetical protein ZK673.7 [Caenorhabditis elegans] ref|NP_496251.1| TropoNin C family member (tnc-2) [Caenorhabditis elegans] sp|Q09665|TNNC2_CAEEL Troponin C, isoform 2 dbj|BAB84566.1| troponin C [Caenorhabditis elegans] 1.0E-74
blast CAE59677 Hypothetical protein CBG03100 [Caenorhabditis briggsae] 2.0E-74
blast CAE59677 Hypothetical protein CBG03100 [Caenorhabditis briggsae] 3.0E-74
blast CAA88482 Hypothetical protein ZK673.7 [Caenorhabditis elegans] ref|NP_496251.1| TropoNin C family member (tnc-2) [Caenorhabditis elegans] sp|Q09665|TNNC2_CAEEL Troponin C, isoform 2 dbj|BAB84566.1| troponin C [Caenorhabditis elegans] 4.0E-63
blast CAE59677 Hypothetical protein CBG03100 [Caenorhabditis briggsae] 5.0E-62
blast CAA88484 Hypothetical protein ZK673.10 [Caenorhabditis elegans] ref|NP_496250.1| ZK673.10 [Caenorhabditis elegans] 1.0E-59
blast P15159 Troponin C prf||1508214A troponin C 9.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0082
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 9.1E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.7E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.7E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0082
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.028
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.7E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.7E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0082
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 9.1E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.7E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.7E-9
Sequence
Target Sequence 
>C. ELEGANS:188890_AT
agacgtcgttgctgatgctttggaaaagctttctgccgatcagatcgagcaattccgtaa
atactttaacatgttcgataaagagggaaaaggatatattcgtgctacccaggtcggaca
aatcctccgtaccatgggacaagccttcgaagagcgtgacttgaaacagctcatcaagga
gttcgatgctgatggttccggagagattgagttcgaagagttcgccgctatggttgccaa
ctttgttgtcaacaatgagaacgacgaaggactcgaggaggagcttcgcgaggctttccg
tctttacgacaaagaaggaaacggatatatcaacgtctcagatcttcgtgacattctccg
tgctcttgacgataatgtttcagaggaagagctcgacgaaatgattgctgaaattgatgc
tgacggttccggaactgtcgatttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACGTCGTTGCTGATGCTTTGGAA 387 69 18 Antisense
GGAAAAGCTTTCTGCCGATCAGATC 626 527 39 Antisense
AAGGATATATTCGTGCTACCCAGGT 112 161 107 Antisense
AGGTCGGACAAATCCTCCGTACCAT 253 1 128 Antisense
CCGTACCATGGGACAAGCCTTCGAA 682 261 144 Antisense
AGTTCGATGCTGATGGTTCCGGAGA 584 63 197 Antisense
TCGAAGAGTTCGCCGCTATGGTTGC 204 601 230 Antisense
TCGAGGAGGAGCTTCGCGAGGCTTT 283 601 290 Antisense
GTCTCAGATCTTCGTGACATTCTCC 43 471 352 Antisense
CATTCTCCGTGCTCTTGACGATAAT 345 217 369 Antisense
GACGGTTCCGGAACTGTCGATTTCG 558 375 439 Antisense
Sequence Source Affymetrix Proprietary Database