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[188889_at] caltractin

Description R08D7.5 /REP_DB=WormBase Gene ID /WP=CE00293 /TR=SW:P30644 /GB=CAA78051.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Caltractin
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_high_8_8 > 16      6grp_highest_nonorm > 91      6grp_total > 68      4grp_total > 30      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 170.1
(3)
P 		106.9
(-2.3)
P 		98.4
(-3)
M 		150.7
(1.4)
P 		72
B 153.1
(2.5)
P 		132.9
(1.1)
P 		74.1
(-3)
M 		160.8
(3)
P 		87
C 202.2
(3)
P 		86
(-3)
A 		122.1
(-1.1)
P 		124.2
(-1)
P 		116
avr 175.1
(3) 		108.6
(-2.2) 		98.2
(-3) 		145.2
(0.7) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 150.7
(-0.8)
P 		155.7
(-0.4)
P 		189.4
(2.6)
P 		173.7
(1.2)
P 		126.6
(-3)
P 		193.6
(3)
P 		67
B 170.5
(-1.4)
P 		147.4
(-2.7)
P 		205
(0.6)
P 		141.9
(-3)
P 		189.1
(-0.3)
P 		248.2
(3)
P 		106
C 200.7
(-0.5)
P 		117.6
(-3)
P 		116.5
(-3)
P 		151.5
(-2)
P 		181.8
(-1)
P 		316.9
(3)
P 		200
avr 174
(-1.2) 		140.2
(-3) 		170.3
(-1.4) 		155.7
(-2.2) 		165.8
(-1.6) 		252.9
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 61.9
(3)
P 		23.2
(-2.8)
P 		25.7
(-2.5)
M 		22.1
(-3)
P 		40
B 48.8
(3)
P 		32.8
(-0)
P 		17.2
(-3)
M 		34.3
(0.2)
P 		32
C 66.9
(3)
P 		24.7
(-2.5)
A 		42.6
(-0.2)
P 		20.9
(-3)
P 		46
avr 59.2
(3) 		26.9
(-2.8) 		28.5
(-2.5) 		25.8
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 27.8
(-3)
P 		55.4
(3)
P 		41.2
(-0.1)
P 		44.1
(0.5)
P 		38.2
(-0.7)
P 		47.1
(1.2)
P 		28
B 59.3
(-0.6)
P 		49.1
(-1.7)
P 		49.8
(-1.7)
P 		37.6
(-3)
P 		76.8
(1.3)
P 		92.6
(3)
P 		55
C 74.4
(0.5)
P 		35.9
(-2.5)
P 		29.7
(-3)
P 		30.5
(-2.9)
P 		58.8
(-0.7)
P 		106.1
(3)
P 		76
avr 53.8
(-0.8) 		46.8
(-1.7) 		40.2
(-2.6) 		37.4
(-3) 		57.9
(-0.2) 		81.9
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7752
Sequence Type Exemplar sequence
Representative Public ID R08D7.5 NCBI
Target Description R08D7.5 /REP_DB=WormBase Gene ID /WP=CE00293 /TR=SW:P30644 /GB=CAA78051.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Caltractin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066585(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066585 NCBI Caenorhabditis elegans R08D7.5 (caltractin) mRNA, complete cds. 10/11 None
SNAP00000003057 ENSEMBL cdna:SNAP chromosome:CEL140:III:8974031:8974831:1 10/11 None
GENEFINDER00000003062 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8974031:8974831:1 10/11 None
R08D7.5 ENSEMBL cdna:known chromosome:CEL140:III:8974091:8974831:1 gene:R08D7.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8974086-8974827(+) 100.0 100.0
Public Domain and Genome References
Gene Title caltractin
Ensembl R08D7.5
Entrez Gene 187699 Entrez gene
SwissProt P30644 EMBL-EBI
WormBase CE33292 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA78051 Hypothetical protein R08D7.5 [Caenorhabditis elegans] ref|NP_498986.2| R08D7.5 [Caenorhabditis elegans] sp|P30644|YNE5_CAEEL Hypothetical calcium-binding protein R08D7.5 in chromosome III 2.0E-81
blast CAA78051 Hypothetical protein R08D7.5 [Caenorhabditis elegans] ref|NP_498986.2| R08D7.5 [Caenorhabditis elegans] sp|P30644|YNE5_CAEEL Hypothetical calcium-binding protein R08D7.5 in chromosome III 5.0E-81
blast CAE62696 Hypothetical protein CBG06844 [Caenorhabditis briggsae] 3.0E-74
blast CAE62696 Hypothetical protein CBG06844 [Caenorhabditis briggsae] 2.0E-65
blast CAA49153 caltractin [Scherffelia dubia] sp|Q06827|CATR_SCHDU Caltractin (Centrin) 3.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0050
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.62
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0050
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.62
Sequence
Target Sequence 
>C. ELEGANS:188889_AT
atgtgcaccgaacaaaagccaaatttgctcaagctttcacaattgaaaatggtgctccgt
gctcttggatatgatccaagaaactcaaaagtacaagagatgactaggaaaatcaaagat
ggaagaagcatggtaatgggatggcatggagagaaggattacatggacgttgacgaactg
tggaatgcattacaatcaaaagacgatgaaggagactcaacagaagataaagttacaacg
gaaatgagatctgcattcaaattatttgatccagaaagtaaaggaacgattactgtcgcc
aatttaaaaatggtttgtaatcatgtggagttaaaatcaaaatttcgaacgaaagttttg
aaaaaagggccaaattttttgaagtcggtcgccaaggaactcggagaaacgttggcagat
gcagatttcgatgaaatgattcgcgaagctggtggtgataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCACCGAACAAAAGCCAAATT 130 45 13 Antisense
AGCCAAATTTGCTCAAGCTTTCACA 51 85 29 Antisense
ATTGAAAATGGTGCTCCGTGCTCTT 619 5 54 Antisense
GCTCCGTGCTCTTGGATATGATCCA 350 299 66 Antisense
GAAGGATTACATGGACGTTGACGAA 344 333 165 Antisense
GTTGACGAACTGTGGAATGCATTAC 144 437 181 Antisense
GGAACGATTACTGTCGCCAATTTAA 166 527 295 Antisense
TTGAAGTCGGTCGCCAAGGAACTCG 546 679 391 Antisense
GGAACTCGGAGAAACGTTGGCAGAT 162 529 408 Antisense
GTTGGCAGATGCAGATTTCGATGAA 662 435 423 Antisense
GATTCGCGAAGCTGGTGGTGATAAT 548 431 450 Antisense
Sequence Source Affymetrix Proprietary Database