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[188888_s_at] 7TM receptor /// 7TM receptor

Description T23D5.12 /REP_DB=WormBase Gene ID /WP=CE16452 /TR=O45809 /GB=CAB04820.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 20      4grp_total > 25      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 34.8
(-3)
A 		56
(-0.7)
A 		51.4
(-1.2)
A 		89.8
(3)
P 		55
B 37.2
(-3)
P 		66.6
(3)
A 		53
(0.2)
A 		64.1
(2.5)
P 		29
C 50.7
(-3)
P 		74
(-0.8)
A 		55.9
(-2.5)
M 		113.9
(3)
P 		63
avr 40.9
(-3) 		65.5
(0) 		53.4
(-1.5) 		89.3
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 26.5
(-3)
A 		40.8
(2.5)
A 		37.3
(1.1)
P 		37.3
(1.1)
M 		42.2
(3)
A 		36.8
(0.9)
A 		16
B 34.8
(-1.3)
A 		54.6
(2)
P 		60.8
(3)
P 		48.9
(1)
A 		35
(-1.3)
A 		24.7
(-3)
A 		36
C 37.2
(-1.7)
P 		52.5
(3)
P 		34
(-2.7)
A 		46.5
(1.2)
P 		33
(-3)
A 		37.3
(-1.7)
A 		20
avr 32.8
(-3) 		49.3
(3) 		44
(1.1) 		44.2
(1.1) 		36.7
(-1.6) 		32.9
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 12.7
(-0.5)
A 		12.2
(-3)
A 		13.4
(3)
A 		13.1
(1.5)
P 		1
B 11.9
(-3)
P 		16.5
(3)
A 		12.3
(-2.5)
A 		13.7
(-0.7)
P 		5
C 16.8
(-3)
P 		21.3
(3)
A 		19.5
(0.6)
M 		19.2
(0.2)
P 		5
avr 13.8
(-3) 		16.7
(3) 		15.1
(-0.3) 		15.3
(0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.9
(-3)
A 		14.5
(3)
A 		8.1
(-1)
P 		9.5
(-0.1)
M 		12.7
(1.9)
A 		9
(-0.4)
A 		10
B 12.1
(-1.1)
A 		18.2
(3)
P 		14.8
(0.7)
P 		13
(-0.5)
A 		14.2
(0.3)
A 		9.2
(-3)
A 		9
C 13.8
(1.2)
P 		16
(3)
P 		8.6
(-3)
A 		9.4
(-2.4)
P 		10.7
(-1.3)
A 		12.5
(0.2)
A 		7
avr 10.3
(-2.9) 		16.2
(3) 		10.5
(-2.7) 		10.6
(-2.6) 		12.5
(-0.7) 		10.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188888_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14326
Sequence Type Exemplar sequence
Representative Public ID T23D5.12 NCBI
Target Description T23D5.12 /REP_DB=WormBase Gene ID /WP=CE16452 /TR=O45809 /GB=CAB04820.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074521(11), NM_074523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074521 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-6) (str-6) mRNA, complete cds. 11/11 None
NM_074523 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-5) (str-5) mRNA, complete cds. 11/11 None
SNAP00000041592 ENSEMBL cdna:SNAP chromosome:CEL140:V:15751581:15752814:-1 11/11 None
SNAP00000041594 ENSEMBL cdna:SNAP chromosome:CEL140:V:15756313:15757016:1 11/11 None
GENEFINDER00000041602 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15755900:15758826:1 9/11 None
GENEFINDER00000041603 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15748296:15752697:-1 9/11 None
T23D5.10 ENSEMBL cdna:known chromosome:CEL140:V:15751581:15752814:-1 gene:T23D5.10 11/11 None
T23D5.12 ENSEMBL cdna:known chromosome:CEL140:V:15755825:15757016:1 gene:T23D5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15755824-15757016(+) 100.0 100.0
chrV:15751580-15752772(-) 99.81 99.81
Public Domain and Genome References
Gene Title 7TM receptor
7TM receptor
Gene Symbol str-6
str-5
Ensembl T23D5.10
T23D5.12
Entrez Gene 188789 Entrez gene
188791 Entrez gene
SwissProt O45808 EMBL-EBI
O45809 EMBL-EBI
WormBase CE16450 Wormbase
CE16452 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04819 Hypothetical protein T23D5.10 [Caenorhabditis elegans] ref|NP_506922.1| Seven TM Receptor family member (str-6) [Caenorhabditis elegans] 0.0
blast CAB04820 Hypothetical protein T23D5.12 [Caenorhabditis elegans] ref|NP_506924.1| Seven TM Receptor family member (str-5) [Caenorhabditis elegans] 0.0
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 1.0E-174
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.1E-17
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506922.1 7 26-48,60-82,107-129,150-169,184-203,264-286,296-318
NP_506924.1 7 15-37,46-68,93-115,136-155,170-189,250-272,282-304
T23D5.10 7 26-48,60-82,107-129,150-169,184-203,264-286,296-318
T23D5.12 7 15-37,46-68,93-115,136-155,170-189,250-272,282-304
SNAP00000041592 5 30-49,61-83,106-128,222-244,254-276
SNAP00000041594 4 5-24,65-87,118-140,150-172
GENEFINDER00000041602 14 21-43,68-90,111-130,145-164,225-247,257-279,305-327,331-353,366-388,413-435,456-478,522-544,565-587,602-624
GENEFINDER00000041603 10 21-43,68-90,111-130,145-164,225-247,257-279,305-327,331-353,366-388,413-435
Sequence
Target Sequence 
>C. ELEGANS:188888_S_AT
gaataggtgccacatggtccattggaattcattatttcttggagaatgataacttcacgc
tgaactactttgagaatggggtttatgatcactacggatggaaattgtcggcgattccaa
gttttacattcgtaatttacactgagagaggagcaatccgctggaggaacttggcatgta
caattgagatgacaatgattattggacttcaatactcaattatttgcttttgtggcagaa
aaatgagcgttggcatgaaagagaaaatttcaatgctgtcggagacaagtaaacgactgc
atactcagttcttcaaggcgttgattctccagatcgtagtcccgacaattctcctattct
tcccaatgatcatcataatctacctgccagttttcaatctcaaattcagttttcccaccg
ggatcctgttcagcgcattcgcaatctacccatcaatagatatcgccataattttgtaca
ttgtctcggattatcgaattgctatcaagttacttttaaaatcaatcaaatccgtgttac
tatcttcaagctactttccgcatgaactttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATAGGTGCCACATGGTCCATTGG 651 321 440 Antisense
GATAACTTCACGCTGAACTACTTTG 456 423 487 Antisense
TCCGCTGGAGGAACTTGGCATGTAC 444 595 596 Antisense
TGCATACTCAGTTCTTCAAGGCGTT 135 577 737 Antisense
CAAGGCGTTGATTCTCCAGATCGTA 310 183 753 Antisense
CAGATCGTAGTCCCGACAATTCTCC 644 205 769 Antisense
ATCATCATAATCTACCTGCCAGTTT 235 29 808 Antisense
CCTGCCAGTTTTCAATCTCAAATTC 58 267 822 Antisense
GATCCTGTTCAGCGCATTCGCAATC 116 417 861 Antisense
ATCCGTGTTACTATCTTCAAGCTAC 375 39 969 Antisense
CAAGCTACTTTCCGCATGAACTTTC 118 187 986 Antisense
Sequence Source Affymetrix Proprietary Database