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[188884_at] 7TM receptor

Description F07B10.2 /REP_DB=WormBase Gene ID /WP=CE15756 /TR=Q19145 /GB=CAB01141.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 22      4grp_total > 03      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 36.8
(-2.5)
A 		30.8
(-3)
A 		60.8
(-0.6)
A 		106.9
(3)
A 		76
B 51.7
(1.2)
P 		47.3
(0.5)
A 		25.6
(-3)
A 		62.7
(3)
A 		37
C 39.5
(-1.2)
A 		34.9
(-1.5)
A 		12.1
(-3)
A 		104.9
(3)
A 		93
avr 42.7
(-2) 		37.7
(-2.5) 		32.8
(-3) 		91.5
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 63.6
(2.7)
A 		46.7
(0.9)
P 		66.5
(3)
A 		40.5
(0.2)
A 		40.5
(0.2)
A 		10.3
(-3)
A 		56
B 82.5
(2.8)
A 		39.8
(-1.2)
A 		84.5
(3)
A 		31.8
(-1.9)
A 		32.5
(-1.9)
A 		20.5
(-3)
A 		64
C 44.4
(-1)
P 		122.9
(3)
M 		44.4
(-1)
A 		75.1
(0.6)
P 		5
(-3)
A 		29
(-1.8)
A 		118
avr 63.5
(2.2) 		69.8
(3) 		65.1
(2.4) 		49.1
(0.5) 		26
(-2.3) 		19.9
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 13.4
(1.4)
A 		6.7
(-3)
A 		15.9
(3)
A 		15.6
(2.8)
A 		9
B 16.5
(3)
P 		11.7
(0.3)
A 		5.9
(-3)
A 		13.4
(1.2)
A 		11
C 13.1
(1)
A 		10
(-0.4)
A 		4.2
(-3)
A 		17.7
(3)
A 		14
avr 14.3
(1.9) 		9.5
(-2.3) 		8.7
(-3) 		15.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 11.7
(0.9)
A 		16.6
(3)
P 		14.5
(2.1)
A 		10.3
(0.3)
A 		12.2
(1.1)
A 		2.5
(-3)
A 		14
B 28.7
(3)
A 		13.3
(-1.4)
A 		20.5
(0.7)
A 		8.4
(-2.8)
A 		13.2
(-1.4)
A 		7.6
(-3)
A 		21
C 16.5
(-0.5)
P 		37.5
(3)
M 		11.3
(-1.4)
A 		15.1
(-0.7)
P 		1.6
(-3)
A 		9.7
(-1.6)
A 		36
avr 19
(1.7) 		22.5
(3) 		15.4
(0.3) 		11.3
(-1.2) 		9
(-2.1) 		6.6
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14121
Sequence Type Exemplar sequence
Representative Public ID F07B10.2 NCBI
Target Description F07B10.2 /REP_DB=WormBase Gene ID /WP=CE15756 /TR=Q19145 /GB=CAB01141.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073459(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073459 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-116) (str-116) mRNA, complete cds. 11/11 None
SNAP00000021745 ENSEMBL cdna:SNAP chromosome:CEL140:V:11269961:11270911:1 11/11 None
F07B10.2 ENSEMBL cdna:known chromosome:CEL140:V:11269569:11270911:1 gene:F07B10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021749 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11269568-11270911(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-116
Ensembl F07B10.2
Entrez Gene 184121 Entrez gene
SwissProt Q19145 EMBL-EBI
WormBase CE15756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01141 Hypothetical protein F07B10.2 [Caenorhabditis elegans] ref|NP_505860.1| Seven TM Receptor family member (str-116) [Caenorhabditis elegans] 0.0
blast CAE75522 Hypothetical protein CBG23540 [Caenorhabditis briggsae] 1.0E-153
blast CAE75523 Hypothetical protein CBG23541 [Caenorhabditis briggsae] 1.0E-151
blast CAB01141 Hypothetical protein F07B10.2 [Caenorhabditis elegans] ref|NP_505860.1| Seven TM Receptor family member (str-116) [Caenorhabditis elegans] 1.0E-131
blast CAE75523 Hypothetical protein CBG23541 [Caenorhabditis briggsae] 5.0E-99
blast CAE75522 Hypothetical protein CBG23540 [Caenorhabditis briggsae] 8.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.9E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.4E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.4E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505860.1 7 15-34,46-68,88-110,123-145,203-225,246-268,283-305
F07B10.2 7 15-34,46-68,88-110,123-145,203-225,246-268,283-305
SNAP00000021745 4 24-46,103-125,146-168,183-205
Sequence
Target Sequence 
>C. ELEGANS:188884_AT
aagttgggggcttactgcagcttttatgttcccgcaaaccaatcgaacaactgaaagctt
caactacgtaataaaaacttcttatgacttagatccttattggacggattatgttgccta
taaatattttgacaccgatgagaatcatgtgagatgggtgaatgttcttagtttatttgg
agtcttgcagcacggattagtaattacgttgagttttggaaccttattctactgtggaat
taaaacttatctcagcattactgaacatgttggaatgtccagcaagacccgaagtcttca
acttcaactattccgtgctttaacatgtcttccaatgctcatgatgtacatgccaatagg
attcatgttttcttgcccttactttgatttgcaacttggagcagtcacaaactatcaaac
cgtcatggcacagttatacccaggaatcgacccatttatgttgctatttcttattaacgc
ctacagaaagacagtgttaagcttgatctgtcctaattttatccagaaaaaatatgttca
aacggcaactactcgtgatggcacagatgcctcggcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGGGGGCTTACTGCAGCTTTT 216 103 447 Antisense
GCTTTTATGTTCCCGCAAACCAATC 225 303 466 Antisense
GAATGTCCAGCAAGACCCGAAGTCT 256 331 719 Antisense
GTCTTCAACTTCAACTATTCCGTGC 174 469 740 Antisense
ATTCCGTGCTTTAACATGTCTTCCA 310 9 756 Antisense
TTTTCTTGCCCTTACTTTGATTTGC 349 677 814 Antisense
AAACCGTCATGGCACAGTTATACCC 542 125 863 Antisense
TTATACCCAGGAATCGACCCATTTA 510 673 880 Antisense
GACCCATTTATGTTGCTATTTCTTA 623 381 895 Antisense
AACGGCAACTACTCGTGATGGCACA 74 135 987 Antisense
GTGATGGCACAGATGCCTCGGCAAC 559 483 1001 Antisense
Sequence Source Affymetrix Proprietary Database