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[188883_at] 7TM receptor

Description T23D5.11 /REP_DB=WormBase Gene ID /WP=CE16451 /TR=O45802 /GB=CAB04814.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 58      4grp_total > 24      6grp_cgc > 17      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 2.8
(-3)
A 		4.6
(-2.8)
A 		8.4
(-2.3)
A 		52.3
(3)
A 		50
B 2.6
(-3)
A 		4.8
(-2)
A 		3.2
(-2.7)
A 		16.3
(3)
A 		14
C 3.7
(-3)
A 		24.6
(1.5)
A 		31.7
(3)
A 		5.7
(-2.6)
A 		28
avr 3
(-3) 		11.3
(-0.7) 		14.4
(0.1) 		24.8
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 27.2
(3)
A 		3.8
(-3)
A 		4
(-2.9)
A 		5
(-2.7)
A 		4.1
(-2.9)
A 		4.7
(-2.8)
A 		23
B 3.5
(-1.2)
A 		4.1
(-0.2)
A 		2.4
(-3)
A 		4.5
(0.5)
A 		3.4
(-1.3)
A 		6
(3)
A 		4
C 1.1
(-3)
A 		6.8
(-1.7)
A 		5
(-2.1)
A 		1.8
(-2.8)
A 		3.6
(-2.4)
A 		28
(3)
A 		27
avr 10.6
(1.5) 		4.9
(-2.2) 		3.8
(-2.9) 		3.8
(-2.9) 		3.7
(-3) 		12.9
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1
(-3)
A 		1
(-3)
A 		2.2
(-1.9)
A 		7.7
(3)
A 		7
B 0.8
(-2.8)
A 		1.2
(-1.9)
A 		0.7
(-3)
A 		3.5
(3)
A 		3
C 1.2
(-2.9)
A 		7.1
(0.7)
A 		11
(3)
A 		1
(-3)
A 		10
avr 1
(-3) 		3.1
(0.5) 		4.6
(3) 		4.1
(2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5
(3)
A 		1.3
(-2.4)
A 		0.9
(-3)
A 		1.3
(-2.4)
A 		1.2
(-2.6)
A 		1.2
(-2.6)
A 		4
B 1.2
(-0.8)
A 		1.4
(-0)
A 		0.6
(-3)
A 		1.2
(-0.8)
A 		1.4
(-0)
A 		2.2
(3)
A 		2
C 0.4
(-3)
A 		2.1
(-1.9)
A 		1.3
(-2.4)
A 		0.4
(-3)
A 		1.2
(-2.5)
A 		9.4
(3)
A 		9
avr 2.2
(-0.7) 		1.6
(-1.8) 		0.9
(-3) 		1
(-2.8) 		1.3
(-2.3) 		4.3
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188883_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14435
Sequence Type Exemplar sequence
Representative Public ID T23D5.11 NCBI
Target Description T23D5.11 /REP_DB=WormBase Gene ID /WP=CE16451 /TR=O45802 /GB=CAB04814.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074524 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-8) (str-8) mRNA, complete cds. 11/11 A 
SNAP00000041595 ENSEMBL cdna:SNAP chromosome:CEL140:V:15757615:15758978:1 10/11 None
GENEFINDER00000041602 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15755900:15758826:1 10/11 None
T23D5.11 ENSEMBL cdna:known chromosome:CEL140:V:15757615:15758978:1 gene:T23D5.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15757614-15758978(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-8
Ensembl T23D5.11
Entrez Gene 188790 Entrez gene
SwissProt O45802 EMBL-EBI
WormBase CE16451 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 0.0
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 1.0E-174
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 1.0E-172
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 1.0E-169
blast CAB04820 Hypothetical protein T23D5.12 [Caenorhabditis elegans] ref|NP_506924.1| Seven TM Receptor family member (str-5) [Caenorhabditis elegans] 1.0E-167
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 1.0E-165
blast CAE66307 Hypothetical protein CBG11557 [Caenorhabditis briggsae] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.1E-17
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506925.1 7 4-21,34-56,81-103,124-146,190-212,233-255,270-292
T23D5.11 7 4-21,34-56,81-103,124-146,190-212,233-255,270-292
SNAP00000041595 7 4-21,34-56,81-103,124-146,190-212,233-255,270-292
GENEFINDER00000041602 14 21-43,68-90,111-130,145-164,225-247,257-279,305-327,331-353,366-388,413-435,456-478,522-544,565-587,602-624
Sequence
Target Sequence 
>C. ELEGANS:188883_AT
gatctccacaatacagtactccatcatattgatttgtgggcaaattatgtacgaaggaat
gcgtattaaactatcccttctttctgctcagagtcgacgtcttcataagcaatttttcag
ggctctcgtgattcagatcactgcgccaacaatcattctgttctgtccagtcttcttcat
gatctacgccccatttgcagacttggaaattagtttcccatcgtgtataatccagagtgg
cttcacagtgtatccagctattgattcgatcatcatgatgagctgtgtttctgagtatgg
aagggcgctgaaaagtaagaactgtaacctgattgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCCACAATACAGTACTCCATC 299 419 597 Antisense
AATGCGTATTAAACTATCCCTTCTT 591 165 654 Antisense
CCTTCTTTCTGCTCAGAGTCGACGT 345 267 672 Antisense
GAGTCGACGTCTTCATAAGCAATTT 96 401 687 Antisense
GCAATTTTTCAGGGCTCTCGTGATT 435 323 705 Antisense
GGGCTCTCGTGATTCAGATCACTGC 493 493 716 Antisense
ATCACTGCGCCAACAATCATTCTGT 188 29 733 Antisense
TTTCCCATCGTGTATAATCCAGAGT 262 667 810 Antisense
TATAATCCAGAGTGGCTTCACAGTG 484 659 822 Antisense
GTATCCAGCTATTGATTCGATCATC 395 455 846 Antisense
GTAAGAACTGTAACCTGATTGTGAT 113 463 911 Antisense
Sequence Source Affymetrix Proprietary Database