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[188881_at] 7TM receptor

Description T06C12.3 /REP_DB=WormBase Gene ID /WP=CE16353 /TR=O18042 /GB=CAB03303.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 43      4grp_total > 13      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 18.8
(-1.4)
A 		5.9
(-3)
A 		7.7
(-2.8)
A 		54.3
(3)
A 		48
B 39.5
(2.5)
A 		15.7
(-1.5)
A 		6.6
(-3)
A 		42.8
(3)
A 		36
C 21.3
(-0.5)
A 		4.3
(-2.8)
A 		2.7
(-3)
A 		47.1
(3)
A 		44
avr 26.5
(-0.1) 		8.6
(-2.6) 		5.7
(-3) 		48.1
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 34.6
(0.3)
A 		4.6
(-3)
A 		58.9
(3)
A 		16.7
(-1.7)
A 		10.2
(-2.4)
A 		24
(-0.9)
A 		54
B 13.4
(-1.2)
A 		12.1
(-1.5)
A 		34.3
(2.4)
A 		3.2
(-3)
A 		37.8
(3)
A 		19.2
(-0.2)
A 		35
C 29.3
(3)
A 		14.3
(-0.1)
A 		2.6
(-2.6)
A 		14.2
(-0.2)
A 		0.6
(-3)
A 		2.8
(-2.5)
A 		29
avr 25.8
(1.3) 		10.3
(-3) 		31.9
(3) 		11.4
(-2.7) 		16.2
(-1.4) 		15.3
(-1.6) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.8
(1.9)
A 		1.3
(-3)
A 		2
(-2.4)
A 		8
(3)
A 		7
B 12.6
(3)
A 		3.9
(-1.7)
A 		1.5
(-3)
A 		9.1
(1.1)
A 		11
C 7.1
(2.3)
A 		1.2
(-2.8)
A 		1
(-3)
A 		7.9
(3)
A 		7
avr 8.8
(3) 		2.1
(-2.5) 		1.5
(-3) 		8.3
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.4
(-0.5)
A 		1.7
(-3)
A 		12.8
(3)
A 		4.2
(-1.6)
A 		3.1
(-2.2)
A 		5.8
(-0.8)
A 		11
B 4.7
(-1.4)
A 		4
(-1.7)
A 		8.3
(0.1)
A 		0.8
(-3)
A 		15.4
(3)
A 		7.2
(-0.4)
A 		15
C 10.8
(3)
A 		4.4
(-0.6)
A 		0.7
(-2.7)
A 		2.9
(-1.5)
A 		0.2
(-3)
A 		0.9
(-2.6)
A 		11
avr 7.3
(3) 		3.4
(-2) 		7.3
(3) 		2.6
(-3) 		6.2
(1.6) 		4.6
(-0.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13733
Sequence Type Exemplar sequence
Representative Public ID T06C12.3 NCBI
Target Description T06C12.3 /REP_DB=WormBase Gene ID /WP=CE16353 /TR=O18042 /GB=CAB03303.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074565 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-56) (str-56) mRNA, complete cds. 11/11 None
T06C12.3 ENSEMBL cdna:known chromosome:CEL140:V:15875157:15876354:1 gene:T06C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15875156-15876354(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-56
Ensembl T06C12.3
Entrez Gene 188164 Entrez gene
SwissProt O18042 EMBL-EBI
WormBase CE16353 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03303 Hypothetical protein T06C12.3 [Caenorhabditis elegans] ref|NP_506966.1| Seven TM Receptor family member (str-56) [Caenorhabditis elegans] 0.0
blast CAB03302 Hypothetical protein T06C12.2 [Caenorhabditis elegans] ref|NP_506965.1| Seven TM Receptor family member (str-57) [Caenorhabditis elegans] 1.0E-157
blast CAB04176 Hypothetical protein F26D2.7 [Caenorhabditis elegans] ref|NP_507149.1| Seven TM Receptor family member (str-55) [Caenorhabditis elegans] 1.0E-130
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506966.1 7 10-31,43-65,85-107,127-149,195-217,245-267,282-304
T06C12.3 7 10-31,43-65,85-107,127-149,195-217,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:188881_AT
aaaccaactgatacttctgatgattatttgagaaaagttatacgagaaaactatgatctt
gaaatttcggcaattgctcgatataccttggctctttatagtgaaagcaatgttatacaa
tgggagattctttcccttattatagcagcaggaattgttctttgttttcaatatttcatt
gtcatatttttcggtgtcaaattgcacttcaaaatcaaagaaaaactgggaactttctcg
ccgtgtcaggtgaaaattcaatcccaaatatttcgagcacttgttgctcaaaccgttggt
ccgacattatttttggttttgccatctgctcctttctttctgacaactctattgtcacct
tatattgatatggagatcaactggaaaactggatggctgtatactttaatcggaatttat
ccaatttttgatagcatcgcatttatattgatagtttccgaataccgaaattatgtcaga
agtaaattattctgcaagaccaacaagagtcctcgagaatttggcaacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCAACTGATACTTCTGATGATT 433 125 469 Antisense
ATTGCTCGATATACCTTGGCTCTTT 180 7 541 Antisense
GATTCTTTCCCTTATTATAGCAGCA 576 429 594 Antisense
TTCATTGTCATATTTTTCGGTGTCA 553 689 643 Antisense
ACTTTCTCGCCGTGTCAGGTGAAAA 318 101 700 Antisense
TCAATCCCAAATATTTCGAGCACTT 663 631 726 Antisense
TCAAACCGTTGGTCCGACATTATTT 516 627 756 Antisense
CCGACATTATTTTTGGTTTTGCCAT 478 261 769 Antisense
TCCTTTCTTTCTGACAACTCTATTG 202 591 798 Antisense
CTGCAAGACCAACAAGAGTCCTCGA 209 237 960 Antisense
GAGTCCTCGAGAATTTGGCAACAAG 247 401 975 Antisense
Sequence Source Affymetrix Proprietary Database