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[188880_at] RSP1 protein

Description C34C12.5 /REP_DB=WormBase Gene ID /WP=CE01513 /TR=Q09497 /GB=CAA87096.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RSP1 protein
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 31      6grp_total > 23      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1142
1 2 3 4 range
A 1057.6
(0.3)
P 		1562
(3)
P 		1438
(2.3)
P 		421.1
(-3)
P 		1141
B 1032
(0.5)
P 		1463.7
(3)
P 		1402.2
(2.6)
P 		435.2
(-3)
P 		1029
C 1063.3
(0.5)
P 		1513.6
(3)
P 		1391.7
(2.3)
P 		419.8
(-3)
P 		1094
avr 1051
(0.5) 		1513.1
(3) 		1410.6
(2.4) 		425.4
(-3) 		1088

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 1117.5
(1)
P 		1316.3
(3)
P 		1153.4
(1.4)
P 		956.7
(-0.6)
P 		709.3
(-3)
P 		712.1
(-3)
P 		607
B 1307.1
(3)
P 		943.6
(-0.5)
P 		848.2
(-1.4)
P 		963.1
(-0.3)
P 		901.5
(-0.9)
P 		679.7
(-3)
P 		627
C 1274.6
(3)
P 		980.2
(-0)
P 		1139
(1.6)
P 		773.6
(-2.2)
P 		1082.6
(1)
P 		691.6
(-3)
P 		583
avr 1233.1
(3) 		1080
(1.3) 		1046.9
(0.9) 		897.8
(-0.7) 		897.8
(-0.7) 		694.5
(-3) 		539
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 423
1 2 3 4 range
A 385.1
(3)
P 		339.1
(2.1)
P 		375.9
(2.8)
P 		61.6
(-3)
P 		324
B 329.1
(2.3)
P 		361.5
(3)
P 		324.9
(2.2)
P 		92.7
(-3)
P 		269
C 352
(1.1)
P 		435.2
(2.3)
P 		485
(3)
P 		70.8
(-3)
P 		414
avr 355.4
(2.3) 		378.6
(2.7) 		395.3
(3) 		75
(-3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 206
(-2.3)
P 		468.1
(3)
P 		251.2
(-1.4)
P 		242.6
(-1.6)
P 		214
(-2.2)
P 		173.4
(-3)
P 		295
B 454.8
(3)
P 		314.1
(-0.4)
P 		206
(-3)
P 		255.1
(-1.8)
P 		366.3
(0.9)
P 		253.5
(-1.9)
P 		249
C 472.4
(3)
P 		299.1
(-0.3)
P 		289.9
(-0.5)
P 		155.6
(-3)
P 		350.3
(0.7)
P 		231.5
(-1.6)
P 		317
avr 377.7
(3) 		360.4
(2.4) 		249
(-1.8) 		217.8
(-3) 		310.2
(0.5) 		219.5
(-2.9) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6542
Sequence Type Exemplar sequence
Representative Public ID C34C12.5 NCBI
Target Description C34C12.5 /REP_DB=WormBase Gene ID /WP=CE01513 /TR=Q09497 /GB=CAA87096.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RSP1 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065315 NCBI Caenorhabditis elegans C34C12.5 (C34C12.5) mRNA, complete cds. 11/11 None
SNAP00000028573 ENSEMBL cdna:SNAP chromosome:CEL140:III:3471994:3473553:1 11/11 None
GENEFINDER00000028582 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3471994:3473553:1 11/11 None
C34C12.5.3 ENSEMBL cdna:known chromosome:CEL140:III:3471986:3473685:1 gene:C34C12.5 11/11 None
C34C12.5.2 ENSEMBL cdna:known chromosome:CEL140:III:3471988:3473644:1 gene:C34C12.5 11/11 None
C34C12.5.1 ENSEMBL cdna:known chromosome:CEL140:III:3471988:3473692:1 gene:C34C12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3471993-3473553(+) 100.0 100.0
Public Domain and Genome References
Gene Title RSP1 protein
Ensembl C34C12.5
Entrez Gene 175451 Entrez gene
SwissProt Q09497 EMBL-EBI
WormBase CE01513 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1594763_AT similar to Ras suppressor protein 1 cfa
CANINE:1584035_S_AT similar to Ras suppressor protein 1 cfa
CANINE_2:CFA.13235.1.A1_S_AT similar to Ras suppressor protein 1 cfa
CANINE_2:CFA.9338.1.A1_AT similar to Ras suppressor protein 1 cfa
CANINE_2:CFAAFFX.7832.1.S1_S_AT similar to Ras suppressor protein 1 cfa
DROSOPHILA_2:1629423_AT Ras suppressor-1 dm
DROSGENOME1:155040_AT Ras suppressor-1 dm
CHICKEN:GGA.11814.1.S1_AT similar to Ras suppressor protein 1 (Rsu-1) (RSP-1) gga
HG-U133_PLUS_2:215618_AT Ras suppressor protein 1 hs
HG-U133A_2:215618_AT Ras suppressor protein 1 hs
HG-U133A:215618_AT Ras suppressor protein 1 hs
HG-U133A:201980_S_AT Ras suppressor protein 1 hs
HG-U133_PLUS_2:201980_S_AT Ras suppressor protein 1 hs
HG-U133A_2:201980_S_AT Ras suppressor protein 1 hs
HG-FOCUS:201980_S_AT Ras suppressor protein 1 hs
HU35KSUBA:HUM_ALU_AT Ras suppressor protein 1 hs
HU35KSUBB:HUM_ALU_AT Ras suppressor protein 1 hs
HU35KSUBC:HUM_ALU_AT Ras suppressor protein 1 hs
HU35KSUBD:HUM_ALU_AT Ras suppressor protein 1 hs
HUGENEFL:HUM_ALU_AT Ras suppressor protein 1 hs
HC-G110:HUM_ALU_AT Ras suppressor protein 1 hs
HU35KSUBB:RC_AA011023_AT Ras suppressor protein 1 hs
HU35KSUBC:RC_N32556_AT Ras suppressor protein 1 hs
HU35KSUBC:RC_H89093_AT Ras suppressor protein 1 hs
HU35KSUBD:RC_H98207_S_AT Ras suppressor protein 1 hs
HUGENEFL:L12535_AT Ras suppressor protein 1 hs
U133_X3P:HS2.60466.1.A1_3P_AT Ras suppressor protein 1 hs
U133_X3P:G10800408_3P_S_AT Ras suppressor protein 1 hs
U133_X3P:HS2.382142.1.S1_3P_X_AT Ras suppressor protein 1 hs
U133_X3P:HS.41215.0.A1_3P_X_AT Ras suppressor protein 1 hs
U133_X3P:HS.41215.0.A1_3P_AT Ras suppressor protein 1 hs
U133_X3P:HS.301186.0.S1_3P_AT Ras suppressor protein 1 hs
U133_X3P:1569543_3P_AT Ras suppressor protein 1 hs
HG-U133_PLUS_2:1560937_AT Ras suppressor protein 1 hs
HG-U133_PLUS_2:1569543_AT Ras suppressor protein 1 hs
HG-U133_PLUS_2:230490_X_AT Ras suppressor protein 1 hs
HG-U133B:230490_X_AT Ras suppressor protein 1 hs
HG-U95AV2:32544_S_AT Ras suppressor protein 1 hs
HG-U95AV2:32545_R_AT Ras suppressor protein 1 hs
HG-U95B:47362_AT Ras suppressor protein 1 hs
HG-U95B:51010_AT Ras suppressor protein 1 hs
HG-U95C:60546_AT Ras suppressor protein 1 hs
HG-U95C:64304_R_AT Ras suppressor protein 1 hs
HG-U133_PLUS_2:231107_AT Ras suppressor protein 1 hs
HG-U133B:231107_AT Ras suppressor protein 1 hs
HG-U133_PLUS_2:239496_AT Ras suppressor protein 1 hs
HG-U133B:239496_AT Ras suppressor protein 1 hs
HG-U95B:42880_AT Ras suppressor protein 1 hs
HG-U95C:54882_AT Ras suppressor protein 1 hs
HU35KSUBD:RC_AA420973_AT Ras suppressor protein 1 hs
HU35KSUBB:RC_F10024_AT Ras suppressor protein 1 hs
HU35KSUBD:RC_AA621495_AT Ras suppressor protein 1 hs
U133_X3P:HS.104234.0.A1_3P_AT Ras suppressor protein 1 hs
U133_X3P:HS.191603.0.A1_3P_AT Ras suppressor protein 1 hs
MU11KSUBB:X63039_S_AT Ras suppressor protein 1 mm
MG-U74AV2:101584_AT Ras suppressor protein 1 mm
MOE430A:1419259_AT Ras suppressor protein 1 mm
MOUSE430A_2:1419259_AT Ras suppressor protein 1 mm
MOUSE430_2:1419259_AT Ras suppressor protein 1 mm
MOUSE430_2:1457220_AT Ras suppressor protein 1, mRNA (cDNA clone MGC:6233 IMAGE:3493122) mm
MOE430B:1457220_AT Ras suppressor protein 1, mRNA (cDNA clone MGC:6233 IMAGE:3493122) mm
MU19KSUBA:TC22575_S_AT Ras suppressor protein 1, mRNA (cDNA clone MGC:6233 IMAGE:3493122) mm
Protein Similarities
Method ID Description E-Value
blast CAA87096 Hypothetical protein C34C12.5 [Caenorhabditis elegans] ref|NP_497716.1| C34C12.5 [Caenorhabditis elegans] 1.0E-140
blast CAE64958 Hypothetical protein CBG09792 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.12
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 3.7E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.013
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.012
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.035
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0029
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0015
Sequence
Target Sequence 
>C. ELEGANS:188880_AT
cgaggatctacctccatcgatttcatctcttccaaaacttcgaattcttaacgtcggaat
gaacaagctgtcgattctgccacgtggattcggatccttcccagagctggaaattcttga
tttgacctacaacaatttgagtgaacgatcattgcctggaaactttttctttatgcaaac
cctccgcgccttgtacctcggagacaatgatttcgaaatgctccccggagacgtcgaaaa
tcttacaaatttgcaaatcctcgtgctccgtgaaaacgatttgctcactcttccaaaaga
gctgggaaagctgacacgtctccgtgagcttcatattcagggaaatcgtctggctatgat
tccaccagagctcggaaatttggagttggtcgggtcaaagcaggtgctcagattggagca
caatccatttattccgagaattgaggagcaattcgaggccaacggagccgccggagtctg
ggctcacatcagaactgacgactatcgatatttcttcggtcgtcaggaaccatcgtcaac
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGGATCTACCTCCATCGATTTCA 535 247 216 Antisense
CGATTTCATCTCTTCCAAAACTTCG 703 247 233 Antisense
ATGAACAAGCTGTCGATTCTGCCAC 669 43 274 Antisense
GATTCTGCCACGTGGATTCGGATCC 585 431 288 Antisense
TTCGAAATGCTCCCCGGAGACGTCG 158 687 427 Antisense
CAAATTTGCAAATCCTCGTGCTCCG 380 193 461 Antisense
AGCTGGGAAAGCTGACACGTCTCCG 316 81 515 Antisense
GTCTCCGTGAGCTTCATATTCAGGG 73 471 533 Antisense
AAATCGTCTGGCTATGATTCCACCA 383 117 558 Antisense
GACTATCGATATTTCTTCGGTCGTC 313 373 715 Antisense
GGTCGTCAGGAACCATCGTCAACTC 111 503 733 Antisense
Sequence Source Affymetrix Proprietary Database