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[188879_s_at] ankyrin motif

Description F14F3.2 /REP_DB=WormBase Gene ID /WP=CE02188 /TR=Q19467 /GB=CAA90184.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ankyrin motif
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 40      4grp_high_8_8 > 42      6grp_highest_nonorm > 61      6grp_total > 14      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 655.8
(3)
P 		592.4
(1.9)
P 		506.9
(0.4)
P 		311.3
(-3)
P 		345
B 512.6
(3)
P 		437.2
(1.1)
P 		430.7
(0.9)
P 		277.1
(-3)
P 		236
C 539.9
(3)
P 		444.9
(0.3)
P 		348.4
(-2.4)
P 		329
(-3)
P 		211
avr 569.4
(3) 		491.5
(1.2) 		428.7
(-0.2) 		305.8
(-3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 656.3
(3)
P 		554.2
(0.8)
P 		406.2
(-2.3)
P 		494
(-0.4)
P 		372.9
(-3)
P 		399.8
(-2.4)
P 		283
B 547.2
(3)
P 		530.8
(2.5)
P 		439.4
(-0.6)
P 		451.1
(-0.2)
P 		404.2
(-1.7)
P 		365.7
(-3)
P 		182
C 519.1
(2.2)
P 		532.9
(2.6)
P 		552.3
(3)
P 		393.7
(-0.6)
P 		340.4
(-1.9)
P 		290.4
(-3)
P 		262
avr 574.2
(3) 		539.3
(2.1) 		466
(0.1) 		446.3
(-0.5) 		372.5
(-2.4) 		352
(-3) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 238.8
(3)
P 		128.6
(-0.4)
P 		132.5
(-0.3)
P 		45.6
(-3)
P 		193
B 163.4
(3)
P 		108
(-0.2)
P 		99.8
(-0.7)
P 		59
(-3)
P 		104
C 178.7
(3)
P 		127.9
(0.5)
P 		121.4
(0.2)
P 		55.5
(-3)
P 		123
avr 193.6
(3) 		121.5
(-0.1) 		117.9
(-0.2) 		53.4
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 121
(-1.2)
P 		197.1
(3)
P 		88.5
(-3)
P 		125.3
(-1)
P 		112.5
(-1.7)
P 		97.3
(-2.5)
P 		109
B 190.4
(3)
P 		176.7
(2)
P 		106.7
(-3)
P 		119.5
(-2.1)
P 		164.2
(1.1)
P 		136.4
(-0.9)
P 		84
C 192.4
(3)
P 		162.6
(1.4)
P 		140.6
(0.3)
P 		79.2
(-3)
P 		110.1
(-1.4)
P 		97.2
(-2)
P 		113
avr 167.9
(2.1) 		178.8
(3) 		111.9
(-2.7) 		108
(-3) 		128.9
(-1.2) 		110.3
(-2.8) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188879_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16287
Sequence Type Exemplar sequence
Representative Public ID F14F3.2 NCBI
Target Description F14F3.2 /REP_DB=WormBase Gene ID /WP=CE02188 /TR=Q19467 /GB=CAA90184.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ankyrin motif
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077360(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077360 NCBI Caenorhabditis elegans F14F3.2 (F14F3.2) mRNA, complete cds. 10/11 None
SNAP00000003726 ENSEMBL cdna:SNAP chromosome:CEL140:X:10524844:10528087:1 10/11 None
GENEFINDER00000003727 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10524844:10528087:1 10/11 None
F14F3.2 ENSEMBL cdna:known chromosome:CEL140:X:10524824:10528363:1 gene:F14F3.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10524843-10528087(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin motif
Ensembl F14F3.2
Entrez Gene 181253 Entrez gene
SwissProt Q19467 EMBL-EBI
WormBase CE31478 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.28930.1.S1_S_AT similar to G protein-coupled receptor kinase-interactor 1 cfa
DROSOPHILA_2:1641554_AT dm
DROSGENOME1:154524_AT dm
HG-U133_PLUS_2:218030_AT G protein-coupled receptor kinase interactor 1 hs
HG-U133A:218030_AT G protein-coupled receptor kinase interactor 1 hs
HG-FOCUS:218030_AT G protein-coupled receptor kinase interactor 1 hs
HG-U133A_2:218030_AT G protein-coupled receptor kinase interactor 1 hs
HU35KSUBA:RC_AA482613_AT G protein-coupled receptor kinase interactor 1 hs
U133_X3P:G7661711_3P_X_AT G protein-coupled receptor kinase interactor 1 hs
U133_X3P:G7661711_3P_AT G protein-coupled receptor kinase interactor 1 hs
HG-U95B:43805_F_AT G protein-coupled receptor kinase interactor 1 hs
HG-U95C:65952_AT G protein-coupled receptor kinase interactor 1 hs
HG-U133_PLUS_2:240229_AT G protein-coupled receptor kinase interactor 1 hs
HG-U133B:240229_AT G protein-coupled receptor kinase interactor 1 hs
HG-U95B:43804_I_AT G protein-coupled receptor kinase interactor 1 hs
HG-U95B:43948_AT G protein-coupled receptor kinase interactor 1 hs
HG-U95D:70272_AT G protein-coupled receptor kinase interactor 1 hs
HG-U95E:88611_AT G protein-coupled receptor kinase interactor 1 hs
HG-U95D:89637_AT G protein-coupled receptor kinase interactor 1 hs
HU35KSUBA:RC_AA258115_AT G protein-coupled receptor kinase interactor 1 hs
MU11KSUBA:AA636941_F_AT G protein-coupled receptor kinase-interactor 1 mm
MG-U74AV2:97339_AT G protein-coupled receptor kinase-interactor 1 mm
MOE430A:1454759_AT G protein-coupled receptor kinase-interactor 1 mm
MOUSE430A_2:1454759_AT G protein-coupled receptor kinase-interactor 1 mm
MOUSE430_2:1454759_AT G protein-coupled receptor kinase-interactor 1 mm
MG-U74CV2:138044_AT G protein-coupled receptor kinase-interactor 1 (Git1), mRNA mm
MU19KSUBB:TC27428_AT G protein-coupled receptor kinase-interactor 1 (Git1), mRNA mm
MU19KSUBB:TC27874_AT G protein-coupled receptor kinase-interactor 1 (Git1), mRNA mm
MU19KSUBC:TC37254_AT G protein-coupled receptor kinase-interactor 1 (Git1), mRNA mm
MU19KSUBC:TC37254_G_AT G protein-coupled receptor kinase-interactor 1 (Git1), mRNA mm
RG-U34A:AF085693_G_AT G protein-coupled receptor kinase interactor 1 rn
RG-U34A:AF085693_AT G protein-coupled receptor kinase interactor 1 rn
RG-U34B:RC_AI009086_AT G protein-coupled receptor kinase interactor 1 rn
RAE230A:1370015_AT G protein-coupled receptor kinase interactor 1 rn
RAT230_2:1370015_AT G protein-coupled receptor kinase interactor 1 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90184 Hypothetical protein F14F3.2 [Caenorhabditis elegans] ref|NP_509761.2| F14F3.2 [Caenorhabditis elegans] 0.0
blast CAE60795 Hypothetical protein CBG04486 [Caenorhabditis briggsae] 0.0
blast CAI52038 G protein-coupled receptor kinase-interactor 1 [Mus musculus] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 2.2E-50
Pfam IPR002110 EMBL-EBI Ankyrin 9.6
Pfam IPR002110 EMBL-EBI Ankyrin 6.1E-8
Sequence
Target Sequence 
>C. ELEGANS:188879_S_AT
gaaggatgccatctccattggctattgtagagactccagaaagagttatgccaccagtgg
gaattcaacaaggtttttcaaggagagatagtgaagatagaatcgatggtggcggagctc
ggtggaggtcaaattccagtgaccgtagaaactcaaacgaccacaaactggacaaaaaag
tagaaagacgtcaggactcaatgatggaaagctcgtcttccctatcacgctcctcacaaa
acccatcttgcctcaatagagaaggtaggattaacccgcaacgtctttccctcagttcat
ccatgttttcagaggtgaaaactcgcgttattcaacaaagtgaaaaaatcacgcgccaca
ttaaaaccctgctgcaacacggacataatggaaacctagacatgaacgcacgcggcggtg
cacacgacattgcttgcgccatcaatagtcttatcactattttgctcccgtacgtgagac
acgagaaaatcgatactttgacggacgccgtggtgcttttgaatgcaaaatgcaatagcc
cagtgttgatgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGATGCCATCTCCATTGGCTAT 103 335 1451 Antisense
GAATCGATGGTGGCGGAGCTCGGTG 449 327 1550 Antisense
TGATGGAAAGCTCGTCTTCCCTATC 444 567 1652 Antisense
CAAAACCCATCTTGCCTCAATAGAG 72 191 1687 Antisense
CCCTCAGTTCATCCATGTTTTCAGA 27 261 1739 Antisense
TAAAACCCTGCTGCAACACGGACAT 134 639 1812 Antisense
AAACCTAGACATGAACGCACGCGGC 366 123 1842 Antisense
TGCTTGCGCCATCAATAGTCTTATC 483 579 1881 Antisense
TAGTCTTATCACTATTTTGCTCCCG 83 655 1896 Antisense
TTTGCTCCCGTACGTGAGACACGAG 365 667 1911 Antisense
ATGCAATAGCCCAGTGTTGATGCCA 148 43 1980 Antisense
Sequence Source Affymetrix Proprietary Database