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[188877_at] C-type lectin

Description T04A8.3 /REP_DB=WormBase Gene ID /WP=CE01072 /TR=Q22136 /GB=CAA84726.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster 6grp_total > 65      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.5
(-3)
A 		2.5
(-3)
A 		3.4
(-1.8)
A 		7.1
(3)
A 		5
B 5
(0.1)
A 		6.7
(3)
A 		3.2
(-3)
A 		3.7
(-2.1)
A 		4
C 2.9
(-2.3)
A 		2.4
(-3)
A 		3.4
(-1.6)
A 		6.6
(3)
A 		4
avr 3.5
(-2.5) 		3.9
(-1.6) 		3.3
(-3) 		5.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.2
(-2.7)
A 		2.7
(-2.9)
A 		14.9
(3)
A 		3
(-2.8)
A 		2.5
(-3)
A 		3
(-2.8)
A 		12
B 2.1
(-2.9)
A 		2
(-3)
A 		1.9
(-3)
A 		15.7
(3)
A 		2.5
(-2.7)
A 		6.2
(-1.1)
A 		14
C 3.3
(-3)
A 		10.7
(-0.1)
A 		3.6
(-2.8)
A 		3.3
(-3)
A 		3.2
(-3)
A 		18.8
(3)
A 		16
avr 2.9
(-2.8) 		5.1
(-0.8) 		6.8
(0.7) 		7.3
(1.2) 		2.7
(-3) 		9.3
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(1.8)
A 		0.5
(-3)
A 		0.9
(1.8)
A 		1
(3)
A 		1
B 1.6
(2.4)
A 		1.7
(3)
A 		0.7
(-3)
A 		0.8
(-2.4)
A 		1
C 0.9
(-0.6)
A 		0.7
(-3)
A 		1.2
(3)
A 		1.1
(1.8)
A 		1
avr 1.1
(3) 		1
(-0) 		0.9
(-3) 		1
(-0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1
(-2.1)
A 		3.2
(3)
A 		0.8
(-2.5)
A 		0.8
(-2.5)
A 		0.7
(-2.8)
A 		3
B 0.7
(-2.7)
A 		0.7
(-2.7)
A 		0.5
(-3)
A 		4.2
(3)
A 		1
(-2.2)
A 		2.3
(-0.1)
A 		4
C 1.2
(-2.5)
A 		3.3
(-0.2)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		1
(-2.7)
A 		6.3
(3)
A 		6
avr 0.8
(-3) 		1.7
(-0.7) 		1.5
(-1.2) 		1.9
(-0.1) 		0.9
(-2.7) 		3.1
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6072
Sequence Type Exemplar sequence
Representative Public ID T04A8.3 NCBI
Target Description T04A8.3 /REP_DB=WormBase Gene ID /WP=CE01072 /TR=Q22136 /GB=CAA84726.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065555 NCBI Caenorhabditis elegans T04A8.3 (T04A8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000041111 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4681961:4687158:-1 11/11 None
SNAP00000041091 ENSEMBL cdna:SNAP chromosome:CEL140:III:4682737:4687158:-1 11/11 None
T04A8.3 ENSEMBL cdna:known chromosome:CEL140:III:4682737:4684744:-1 gene:T04A8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4682736-4684744(-) 100.0 100.0
Public Domain and Genome References
Gene Title C-type lectin
Ensembl T04A8.3
Entrez Gene 188038 Entrez gene
SwissProt Q22136 EMBL-EBI
WormBase CE01072 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84726 Hypothetical protein T04A8.3 [Caenorhabditis elegans] ref|NP_497956.1| T04A8.3 [Caenorhabditis elegans] 0.0
blast CAA84652 Hypothetical protein F10F2.7 [Caenorhabditis elegans] ref|NP_497944.1| F10F2.7 [Caenorhabditis elegans] 0.0
blast CAA84655 Hypothetical protein F10F2.5 [Caenorhabditis elegans] ref|NP_497947.2| F10F2.5 [Caenorhabditis elegans] 1.0E-169
blast CAA84722 Hypothetical protein T04A8.4 [Caenorhabditis elegans] ref|NP_497957.1| T04A8.4 [Caenorhabditis elegans] 1.0E-159
blast CAA84652 Hypothetical protein F10F2.7 [Caenorhabditis elegans] ref|NP_497944.1| F10F2.7 [Caenorhabditis elegans] 1.0E-139
blast CAA84653 Hypothetical protein F10F2.6 [Caenorhabditis elegans] ref|NP_497945.1| F10F2.6 [Caenorhabditis elegans] 1.0E-122
Sequence
Target Sequence 
>C. ELEGANS:188877_AT
gtggtgtcacaagtacgttcatgatatgagtatgaacaacgacgacgccgagaagaagtg
taacgacatgggagcccatctttcttccttcacgacatatgaagaattgaaattgctaga
tgaaatgatccttgaagtataccccaacgataataacatagctgtgtggttgggagctaa
acggagagaagaatgtggcgacctgtcaaaaaatttcacaggaggatattccaaagatat
acatgatccttgtgctcgtagtcgtgtattcgaatggcaaaatggagttgctcaaaatcc
acccatttttgttggtgacggctttgactactgggcggagaaatacgaacctaatcatag
tacagattctgaaagatgcttggttcagatgagcggatccatgtctgtgtggtatggaga
taataagccccgaaacatgcaaatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTGTCACAAGTACGTTCATGAT 457 489 867 Antisense
GTATGAACAACGACGACGCCGAGAA 635 453 896 Antisense
AAGTGTAACGACATGGGAGCCCATC 162 159 922 Antisense
ATCTTTCTTCCTTCACGACATATGA 28 33 944 Antisense
GATCCTTGAAGTATACCCCAACGAT 642 415 993 Antisense
GAGAAGAATGTGGCGACCTGTCAAA 28 393 1052 Antisense
TACATGATCCTTGTGCTCGTAGTCG 124 645 1106 Antisense
TGGAGTTGCTCAAAATCCACCCATT 520 549 1149 Antisense
TTGGTGACGGCTTTGACTACTGGGC 255 709 1178 Antisense
TGAGCGGATCCATGTCTGTGTGGTA 58 569 1256 Antisense
ATAAGCCCCGAAACATGCAAATCAA 247 25 1289 Antisense
Sequence Source Affymetrix Proprietary Database