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[188874_s_at] phospholipase

Description R07B7.9 /REP_DB=WormBase Gene ID /WP=CE06271 /TR=Q21798 /GB=CAB00117.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=phospholipase
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 80      6grp_total > 41      4grp_total > 45      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 187.8
(3)
P 		146
(-1.5)
P 		131.5
(-3)
P 		149.4
(-1.1)
P 		56
B 137.5
(1.3)
P 		145.4
(3)
P 		145.3
(3)
P 		117
(-3)
P 		28
C 174.9
(3)
P 		167.1
(2.1)
P 		141.9
(-0.7)
P 		121.7
(-3)
P 		53
avr 166.7
(3) 		152.8
(0.8) 		139.6
(-1.4) 		129.4
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 238
(1.7)
P 		162.8
(-0.4)
P 		286.5
(3)
P 		188.2
(0.3)
P 		151.1
(-0.7)
P 		67.9
(-3)
P 		219
B 209.8
(-0.2)
P 		177.1
(-1.9)
P 		272.2
(3)
P 		231.8
(0.9)
P 		173.2
(-2.1)
P 		156.6
(-3)
P 		116
C 137
(-0.8)
P 		221
(3)
P 		216.8
(2.8)
P 		206.4
(2.3)
P 		88.2
(-3)
P 		139.8
(-0.7)
P 		133
avr 194.9
(0.2) 		187
(-0.1) 		258.5
(3) 		208.8
(0.8) 		137.5
(-2.3) 		121.4
(-3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 68.4
(3)
P 		31.7
(-1.7)
P 		34.4
(-1.4)
P 		21.9
(-3)
P 		47
B 43.8
(3)
P 		35.9
(0.5)
P 		33.7
(-0.2)
P 		24.9
(-3)
P 		19
C 57.9
(3)
P 		48
(1.4)
P 		49.5
(1.7)
P 		20.5
(-3)
P 		37
avr 56.7
(3) 		38.5
(-0.2) 		39.2
(-0.1) 		22.4
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 43.9
(0.6)
P 		57.9
(2.4)
P 		62.4
(3)
P 		47.7
(1.1)
P 		45.6
(0.8)
P 		16.5
(-3)
P 		46
B 73
(3)
P 		58.9
(-2.8)
P 		66.1
(0.2)
P 		61.4
(-1.8)
P 		70.4
(1.9)
P 		58.4
(-3)
P 		15
C 50.8
(0.4)
P 		67.4
(3)
P 		55.2
(1.1)
P 		41.5
(-1)
P 		28.5
(-3)
P 		46.8
(-0.2)
P 		39
avr 55.9
(1.4) 		61.4
(3) 		61.2
(2.9) 		50.2
(-0.2) 		48.2
(-0.8) 		40.6
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188874_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12561
Sequence Type Exemplar sequence
Representative Public ID R07B7.9 NCBI
Target Description R07B7.9 /REP_DB=WormBase Gene ID /WP=CE06271 /TR=Q21798 /GB=CAB00117.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=phospholipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073627 NCBI Caenorhabditis elegans R07B7.9 (phospholipase) mRNA, complete cds. 11/11 None
SNAP00000027089 ENSEMBL cdna:SNAP chromosome:CEL140:V:12080743:12082122:-1 11/11 None
GENEFINDER00000027110 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12080743:12082839:-1 11/11 None
R07B7.9 ENSEMBL cdna:known chromosome:CEL140:V:12080658:12082839:-1 gene:R07B7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12080742-12082122(-) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase
Ensembl R07B7.9
Entrez Gene 179659 Entrez gene
SwissProt Q21798 EMBL-EBI
WormBase CE31977 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00117 Hypothetical protein R07B7.9 [Caenorhabditis elegans] ref|NP_506028.2| R07B7.9 [Caenorhabditis elegans] 0.0
blast CAE75384 Hypothetical protein CBG23371 [Caenorhabditis briggsae] 1.0E-154
blast CAB00118 Hypothetical protein R07B7.8 [Caenorhabditis elegans] ref|NP_506029.1| R07B7.8 [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 3.5E-7
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 3.5E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506028.2 1 66-85
R07B7.9 1 66-85
GENEFINDER00000027110 1 66-85
Sequence
Target Sequence 
>C. ELEGANS:188874_S_AT
tcggttccgaaaatccaatacctgttaaagaatacaaagcttttattgaagaaggtcttt
tgtatttgaagaagaatcttccaagaacaattgtcagcataattggaatgttcccacctc
aacttttacaggaagcatattacattttgcgaacaggaaaccgacccggaactcctgaga
gtagaaagcaactagatgagctctgtgattcgtacagaaatgcatcgtatgaaattcaaa
acgaaggaaagtttgatgacagagaattcacagttgttgttcaaccatttggtacggaat
atacagatgctttccgaaatgagtttggcaattacagttcagcactctatgcttatgatg
tgtttcatcttggcaaacttggtcaagctattgttgctaaacactattggcaaaatcttt
tcgagccggttggcgaaaagacaaaacgagctgaattgggaaatattactccggaaatat
ttggattatcttcgggcaattcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGTTCCGAAAATCCAATACCTGT 605 601 527 Antisense
AATTGGAATGTTCCCACCTCAACTT 500 177 627 Antisense
TCCCACCTCAACTTTTACAGGAAGC 137 597 638 Antisense
CCGACCCGGAACTCCTGAGAGTAGA 162 261 687 Antisense
CTAGATGAGCTCTGTGATTCGTACA 457 225 718 Antisense
GTTGTTGTTCAACCATTTGGTACGG 65 437 799 Antisense
GTTTGGCAATTACAGTTCAGCACTC 492 451 849 Antisense
AGTTCAGCACTCTATGCTTATGATG 658 63 862 Antisense
GATGTGTTTCATCTTGGCAAACTTG 98 409 883 Antisense
GCAAAATCTTTTCGAGCCGGTTGGC 173 317 936 Antisense
TGGATTATCTTCGGGCAATTCACTT 375 551 1008 Antisense
Sequence Source Affymetrix Proprietary Database