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[188873_at] Hint module

Description ZK1037.10 /REP_DB=WormBase Gene ID /WP=CE16762 /TR=O45992 /GB=CAB03509.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Hint module
Cluster 6grp_total > 93      4grp_total > 10      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 26.9
(-3)
A 		42.2
(-1.2)
A 		51.1
(-0.2)
A 		79.2
(3)
A 		52
B 56.3
(3)
A 		56.2
(3)
A 		47.6
(-0.7)
A 		42.2
(-3)
A 		14
C 32.9
(-1)
A 		27.2
(-1.5)
A 		7.1
(-3)
A 		85.8
(3)
A 		79
avr 38.7
(-2.4) 		41.9
(-1.8) 		35.3
(-3) 		69.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 30.5
(-2.9)
A 		24.7
(-3)
A 		45.6
(-2.6)
A 		217.2
(0.9)
P 		320.4
(3)
P 		59.7
(-2.3)
P 		296
B 12.7
(-3)
A 		26.3
(-2.8)
A 		40.2
(-2.6)
A 		230.2
(0.1)
P 		439.7
(3)
P 		60.9
(-2.3)
P 		427
C 23.3
(-2.6)
A 		38.4
(-2.3)
A 		3.4
(-3)
A 		322.4
(3)
P 		297.3
(2.5)
P 		94.3
(-1.3)
P 		319
avr 22.2
(-3) 		29.8
(-2.9) 		29.7
(-2.9) 		256.6
(1.3) 		352.5
(3) 		71.6
(-2.1) 		330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.8
(-2.1)
A 		9.2
(-3)
A 		13.3
(3)
A 		11.6
(0.5)
A 		4
B 18
(3)
A 		13.9
(0.3)
A 		11
(-1.7)
A 		9
(-3)
A 		9
C 10.9
(1.2)
A 		7.8
(-0.4)
A 		2.5
(-3)
A 		14.5
(3)
A 		12
avr 12.9
(3) 		10.3
(-0.9) 		8.9
(-3) 		11.7
(1.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 5.6
(-3)
A 		8.8
(-2.8)
A 		9.9
(-2.7)
A 		55.1
(0.3)
P 		96.7
(3)
P 		14.5
(-2.4)
P 		91
B 4.4
(-3)
A 		8.8
(-2.8)
A 		9.8
(-2.8)
A 		61
(-1.1)
P 		178.7
(3)
P 		22.7
(-2.4)
P 		174
C 8.6
(-2.5)
A 		11.7
(-2.3)
A 		0.9
(-3)
A 		64.8
(1)
P 		96.2
(3)
P 		31.6
(-1.1)
P 		95
avr 6.2
(-3) 		9.8
(-2.8) 		6.9
(-3) 		60.3
(-0.2) 		123.9
(3) 		22.9
(-2.1) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13803
Sequence Type Exemplar sequence
Representative Public ID ZK1037.10 NCBI
Target Description ZK1037.10 /REP_DB=WormBase Gene ID /WP=CE16762 /TR=O45992 /GB=CAB03509.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Hint module
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074402 NCBI Caenorhabditis elegans WaRThog (hedgehog-like family) family member (wrt-7) (wrt-7) mRNA, complete cds. 11/11 None
SNAP00000019043 ENSEMBL cdna:SNAP chromosome:CEL140:V:15337725:15339891:-1 11/11 None
GENEFINDER00000019052 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15337260:15339900:-1 11/11 None
ZK1037.10 ENSEMBL cdna:known chromosome:CEL140:V:15337368:15340091:-1 gene:ZK1037.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15337724-15340092(-) 100.0 100.0
Public Domain and Genome References
Gene Title Hint module
Gene Symbol wrt-7
Ensembl ZK1037.10
Entrez Gene 191504 Entrez gene
SwissProt O45992 EMBL-EBI
WormBase CE34137 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
7154 cell communication inferred from electronic annotation QuickGO AmiGO
7275 development inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03509 Hypothetical protein ZK1037.10 [Caenorhabditis elegans] ref|NP_506803.2| WaRThog (hedgehog-like family) family member (wrt-7) [Caenorhabditis elegans] 0.0
blast CAB02804 Hypothetical protein C29F3.2 [Caenorhabditis elegans] emb|CAA19424.2| Hypothetical protein C29F3.2 [Caenorhabditis elegans] ref|NP_506805.1| WaRThog (hedgehog-like family) family member (wrt-8) [Caenorhabditis elegans] sp|Q94130|WRT8_CAEEL Warthog protein 8 precursor (M89 protein) [Contains: Warthog protein 8 N-product; Warthog protein 8 C-product] 1.0E-175
blast T19563 hypothetical protein C29F3.2 - Caenorhabditis elegans 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR001767 EMBL-EBI Peptidase C46, hedgehog protein, hint region 6.9E-65
Pfam IPR001767 EMBL-EBI Peptidase C46, hedgehog protein, hint region 1.9E-58
Pfam IPR001767 EMBL-EBI Peptidase C46, hedgehog protein, hint region 6.9E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019052 1 483-505
Sequence
Target Sequence 
>C. ELEGANS:188873_AT
ttggtaatgccgtgccgcagtacaacgtgtatccggcggttgctcaacagccagcgccat
actcttatcttccagcagctccacagtgtcagcaatactattgtttccccaatgatgcag
ttgttaatgtctacgagaaagctgtaaagagaatggatgagctggaaattggtgactggg
ttgaggcactggacgaaaatggggaggacatcacgtttctgcctgtgaagtattggcttc
atcgagatcccgaacaagaagctgaatttttggaattctcattagacaatggagaaacat
tcaccctaaccgaaaaacatttggtatacaccacagagtgccgacaaaattctagtgaac
tcaaaatcagctgggaatccatctctgctgggaaagttaacgctggggattgcttctacc
tggcacagtcagaagccttgacaaagtaccgattggtcgaaattcttgacatcaaaagag
tcaagaaaactggaatctacgctcctatgacatctcagggccatcttcttgtcaacaaga
tccacacgtcttgtcactctgaagttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTAATGCCGTGCCGCAGTACAA 153 707 851 Antisense
TACAACGTGTATCCGGCGGTTGCTC 613 641 871 Antisense
GACTGGGTTGAGGCACTGGACGAAA 31 377 1024 Antisense
GACATCACGTTTCTGCCTGTGAAGT 533 369 1057 Antisense
ATTGGCTTCATCGAGATCCCGAACA 310 3 1082 Antisense
TGGAGAAACATTCACCCTAACCGAA 447 549 1140 Antisense
GGTATACACCACAGAGTGCCGACAA 432 505 1173 Antisense
AATCAGCTGGGAATCCATCTCTGCT 267 171 1215 Antisense
TTAACGCTGGGGATTGCTTCTACCT 316 683 1247 Antisense
GGAATCTACGCTCCTATGACATCTC 551 533 1342 Antisense
CACACGTCTTGTCACTCTGAAGTTG 443 195 1393 Antisense
Sequence Source Affymetrix Proprietary Database