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[188872_at] vimentin like

Description F23B2.6 /REP_DB=WormBase Gene ID /WP=CE09586 /TR=O62183 /GB=CAB05180.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=vimentin like
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 69      6grp_total > 97      4grp_total > 57      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1275
1 2 3 4 range
A 1133.8
(-2.8)
P 		2236.8
(2.8)
P 		2284.4
(3)
P 		1102.4
(-3)
P 		1182
B 1426
(-1.6)
P 		1850.6
(0.4)
P 		2377.5
(3)
P 		1144.3
(-3)
P 		1233
C 1237.6
(-2.4)
P 		1867.5
(0.7)
P 		2328.7
(3)
P 		1106.6
(-3)
P 		1222
avr 1265.8
(-2.3) 		1985
(1.3) 		2330.2
(3) 		1117.8
(-3) 		1212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3003
1 2 3 4 5 6 range
A 1696.8
(-2.4)
P 		1408.1
(-3)
P 		1735.8
(-2.3)
P 		2041.7
(-1.6)
P 		2880.4
(0.3)
P 		4094.8
(3)
P 		2687
B 1419.9
(-2.5)
P 		1217.8
(-3)
P 		1733.3
(-1.8)
P 		1712.2
(-1.8)
P 		2833.7
(0.8)
P 		3775.6
(3)
P 		2558
C 1333.1
(-2.5)
P 		1091.5
(-3)
P 		1905.3
(-1.4)
P 		2170.8
(-0.8)
P 		2882.4
(0.6)
P 		4082.2
(3)
P 		2991
avr 1483.3
(-2.5) 		1239.1
(-3) 		1791.5
(-1.8) 		1974.9
(-1.4) 		2865.5
(0.6) 		3984.2
(3) 		2745
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 650
1 2 3 4 range
A 412.8
(0.5)
P 		485.6
(1.5)
P 		597.2
(3)
P 		161.4
(-3)
P 		436
B 454.7
(1.1)
P 		457.1
(1.2)
P 		550.9
(3)
P 		243.9
(-3)
P 		307
C 409.7
(-0.9)
P 		536.9
(0.4)
P 		811.6
(3)
P 		186.6
(-3)
P 		625
avr 425.7
(0) 		493.2
(0.9) 		653.2
(3) 		197.3
(-3) 		456

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1095
1 2 3 4 5 6 range
A 312.8
(-3)
P 		500.8
(-1.4)
P 		378
(-2.4)
P 		517.8
(-1.2)
P 		869.2
(1.9)
P 		996.9
(3)
P 		684
B 494.1
(-2.5)
P 		405.3
(-3)
P 		420.9
(-2.9)
P 		453.5
(-2.7)
P 		1151.3
(1.5)
P 		1407.9
(3)
P 		1003
C 494.1
(-2.1)
P 		333
(-3)
P 		484.9
(-2.1)
P 		436.6
(-2.4)
P 		932.7
(0.5)
P 		1366.5
(3)
P 		1034
avr 433.7
(-2.9) 		413
(-3) 		427.9
(-2.9) 		469.3
(-2.6) 		984.4
(1.1) 		1257.1
(3) 		844
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8464
Sequence Type Exemplar sequence
Representative Public ID F23B2.6 NCBI
Target Description F23B2.6 /REP_DB=WormBase Gene ID /WP=CE09586 /TR=O62183 /GB=CAB05180.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=vimentin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069193 NCBI Caenorhabditis elegans Ref/ALY RNA export adaptor family member (aly-2) (aly-2) mRNA, complete cds. 11/11 None
SNAP00000024645 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9147456:9148465:1 11/11 None
GENEFINDER00000024659 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9147456:9148465:1 11/11 None
F23B2.6 ENSEMBL cdna:known chromosome:CEL140:IV:9147451:9148562:1 gene:F23B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9147461-9148471(+) 100.0 100.0
Public Domain and Genome References
Gene Title vimentin like
Gene Symbol aly-2
Ensembl F23B2.6
Entrez Gene 177738 Entrez gene
SwissProt O62183 EMBL-EBI
WormBase CE09586 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05180 Hypothetical protein F23B2.6 [Caenorhabditis elegans] ref|NP_501594.1| Ref/ALY RNA export adaptor family member (aly-2) [Caenorhabditis elegans] 2.0E-93
blast CAE74115 Hypothetical protein CBG21776 [Caenorhabditis briggsae] 5.0E-44
blast CAE74114 Hypothetical protein CBG21775 [Caenorhabditis briggsae] 5.0E-37
Sequence
Target Sequence 
>C. ELEGANS:188872_AT
gaaacactgttcgcagatcagcaggtggatcttcaaatgacaacaaacaagtcagaatca
acatttcgaatctggccgaaactgtaatctcgagtgatttgcaagagttattcggtgctt
ttaatttgcacaaagtgtcagtaaatttcaacgaaaatggaggagccgctggaaccggag
atatcactcttaagaagtacgatgcagatcgccttattcagaagtttgctggagttgccc
ttgatggaaaggtcatgcacttcgctgtcatcgaatccagcaatttcgccagaaaacctg
aaatcagaggaacacccaaccgcagacagtcatctggaaagccgatcaacagaaaagtgg
ccaatccgccaagaagacaaaatgctgccaaaccaccagtgaagaagggcaagaaaccag
ctcgtgagcaaaaaccaccaaaaaccgcggagcaacttgacgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACACTGTTCGCAGATCAGCAGG 121 357 200 Antisense
CGAATCTGGCCGAAACTGTAATCTC 505 253 266 Antisense
CGATGCAGATCGCCTTATTCAGAAG 416 247 399 Antisense
CAGAAGTTTGCTGGAGTTGCCCTTG 263 203 418 Antisense
GATGGAAAGGTCATGCACTTCGCTG 443 405 442 Antisense
GCACTTCGCTGTCATCGAATCCAGC 705 315 456 Antisense
GAAATCAGAGGAACACCCAACCGCA 500 361 499 Antisense
CACCCAACCGCAGACAGTCATCTGG 180 201 512 Antisense
AAATGCTGCCAAACCACCAGTGAAG 159 119 579 Antisense
GAAGGGCAAGAAACCAGCTCGTGAG 40 335 603 Antisense
AAACCGCGGAGCAACTTGACGCAGA 688 123 641 Antisense
Sequence Source Affymetrix Proprietary Database