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[188871_at]

Description C02F12.1 /REP_DB=WormBase Gene ID /WP=CE25749 /GEN=tsp-17 /GB=AAK39137.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transpanin
Cluster 6grp_total > 07      4grp_total > 46      6grp_cgc > 25      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 196.8
(3)
A 		110.4
(-2.3)
A 		98.8
(-3)
A 		105.4
(-2.6)
A 		98
B 218.4
(3)
P 		176.2
(1.2)
A 		79.6
(-3)
A 		91.9
(-2.5)
A 		139
C 223
(3)
M 		142.6
(-0.6)
A 		88
(-3)
A 		148.1
(-0.3)
A 		135
avr 212.7
(3) 		143.1
(-0.4) 		88.8
(-3) 		115.1
(-1.7) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 226.8
(3)
P 		182.5
(1.2)
A 		112.5
(-1.6)
A 		168.9
(0.7)
A 		76.9
(-3)
A 		148.5
(-0.1)
A 		150
B 221.3
(3)
A 		147.4
(-0.9)
P 		119.9
(-2.3)
A 		155.3
(-0.5)
A 		107.1
(-3)
A 		143.3
(-1.1)
A 		114
C 170.7
(3)
M 		155.8
(2.1)
A 		70.9
(-2.9)
A 		167.7
(2.8)
A 		69.2
(-3)
A 		100.2
(-1.2)
M 		102
avr 206.3
(3) 		161.9
(0.8) 		101.1
(-2.2) 		164
(0.9) 		84.4
(-3) 		130.7
(-0.7) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 71.6
(3)
A 		24
(-2.1)
A 		25.8
(-1.9)
A 		15.4
(-3)
A 		56
B 69.7
(3)
P 		43.5
(-0.1)
A 		18.4
(-3)
A 		19.6
(-2.9)
A 		51
C 73.8
(3)
M 		41
(-1)
A 		30.7
(-2.3)
A 		25
(-3)
A 		49
avr 71.7
(3) 		36.2
(-1.1) 		25
(-2.4) 		20
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 41.8
(-0.3)
P 		64.9
(3)
A 		24.5
(-2.8)
A 		42.8
(-0.2)
A 		23.2
(-3)
A 		36.2
(-1.1)
A 		42
B 77
(3)
A 		49.1
(-0.5)
P 		29.1
(-3)
A 		41.1
(-1.5)
A 		43.5
(-1.2)
A 		53.4
(0)
A 		48
C 63.3
(3)
M 		47.5
(0.9)
A 		18
(-3)
A 		33.7
(-0.9)
A 		22.4
(-2.4)
A 		33.6
(-0.9)
M 		45
avr 60.7
(3) 		53.8
(1.9) 		23.9
(-3) 		39.2
(-0.5) 		29.7
(-2.1) 		41.1
(-0.2) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18544
Sequence Type Exemplar sequence
Representative Public ID C02F12.1 NCBI
Target Description C02F12.1 /REP_DB=WormBase Gene ID /WP=CE25749 /GEN=tsp-17 /GB=AAK39137.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transpanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076233
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000032670 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3681164:3684001:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076233 4/11 Cross Hyb Matching Probes None
SNAP00000032662 8/11 Cross Hyb Matching Probes None
C02F12.1 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3681313-3684002(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T34080 hypothetical protein C02F12.1 - Caenorhabditis elegans 1.0E-174
blast CAE68470 Hypothetical protein CBG14269 [Caenorhabditis briggsae] 1.0E-139
blast AAK39137 Tetraspanin family protein 17 [Caenorhabditis elegans] ref|NP_508634.2| C02F12.1 [Caenorhabditis elegans] sp|Q11098|TSP17_CAEEL Tetraspanin 5.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 1.0E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032670 6 13-35,60-82,89-111,141-159,271-293,308-330
Sequence
Target Sequence 
>C. ELEGANS:188871_AT
tcgttgggttctgccgttgatggatactattcaattttatgtgtattcggtaaaagaaaa
tgtgcgcgaaatcgtaaaatccaaatatggagtgatgactagcgaacctgaaaataagat
ggtcactgaattcattgacaaacttcaattttatcaccaatgttgcgggggagaaggtcc
cctggactacaaggattcgttctggtacattactaacacgttgcgtggaactcgatcgtt
tgtcccgccaagttgttgcaagcaagctcaagttggaagagcatgggcaccggttcccat
tgacccgatgtgcacaacatatcgctaccttaccacggcatttgacacatctgtaaacac
tgttgggtgtagtgaaagactaatgtcgtggttcaacgagcaaatttggatattcgtagg
atttggattcggttctgcactgaccatgatgcttggaatttgcctctcatgttgtctcat
ctcgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTGGGTTCTGCCGTTGATGGAT 464 603 324 Antisense
GGTCCCCTGGACTACAAGGATTCGT 444 481 499 Antisense
TGCGTGGAACTCGATCGTTTGTCCC 212 581 545 Antisense
TGTCCCGCCAAGTTGTTGCAAGCAA 164 557 564 Antisense
TGGAAGAGCATGGGCACCGGTTCCC 108 547 597 Antisense
ATGTGCACAACATATCGCTACCTTA 73 49 631 Antisense
TTACCACGGCATTTGACACATCTGT 408 681 653 Antisense
GTAGGATTTGGATTCGGTTCTGCAC 422 455 739 Antisense
GGTTCTGCACTGACCATGATGCTTG 40 507 754 Antisense
TGATGCTTGGAATTTGCCTCTCATG 374 565 770 Antisense
CTCTCATGTTGTCTCATCTCGAAAA 219 231 787 Antisense
Sequence Source Affymetrix Proprietary Database