[Home] | [Total List]

[188868_at] 7TM receptor

Description F14H3.1 /REP_DB=WormBase Gene ID /WP=CE15826 /TR=O17809 /GB=CAB05480.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 80      4grp_total > 20      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 52.2
(-1.2)
A 		65.9
(-0.3)
A 		23.1
(-3)
A 		119.2
(3)
A 		96
B 70.6
(2.1)
A 		35.4
(-3)
A 		76.7
(3)
P 		61.9
(0.8)
P 		41
C 72.7
(3)
A 		73
(3)
A 		34.1
(-3)
A 		68.4
(2.3)
A 		39
avr 65.2
(0.2) 		58.1
(-0.9) 		44.6
(-3) 		83.2
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 22.8
(-3)
A 		37.3
(-1.3)
A 		27.5
(-2.5)
A 		74.6
(3)
A 		67.2
(2.1)
A 		54.7
(0.7)
A 		52
B 65.9
(2.2)
P 		38.3
(-3)
A 		54.2
(-0)
P 		70.4
(3)
A 		41.2
(-2.5)
P 		43.4
(-2)
A 		32
C 41.6
(-3)
A 		57.1
(0.4)
P 		59.8
(0.9)
A 		69.3
(3)
A 		48.9
(-1.4)
A 		47
(-1.8)
P 		28
avr 43.4
(-3) 		44.2
(-2.8) 		47.2
(-2.2) 		71.4
(3) 		52.4
(-1.1) 		48.4
(-1.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19
(3)
A 		14.3
(0.8)
A 		6
(-3)
A 		17.4
(2.3)
A 		13
B 22.5
(3)
A 		8.8
(-3)
A 		17.8
(0.9)
P 		13.2
(-1.1)
P 		14
C 24.1
(3)
A 		21
(1.5)
A 		11.9
(-2.8)
A 		11.5
(-3)
A 		13
avr 21.9
(3) 		14.7
(-1.3) 		11.9
(-3) 		14
(-1.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.2
(-3)
A 		13.3
(0.4)
A 		6
(-2.3)
A 		18.9
(2.5)
A 		20.3
(3)
A 		13.3
(0.4)
A 		16
B 22.9
(3)
P 		12.8
(-3)
A 		13.2
(-2.8)
P 		18.6
(0.4)
A 		16.8
(-0.6)
P 		16.2
(-1)
A 		10
C 15.4
(-0.4)
A 		17.4
(3)
P 		15.2
(-0.8)
A 		13.9
(-3)
A 		15.8
(0.3)
A 		15.7
(0.1)
P 		4
avr 14.2
(-0.3) 		14.5
(-0) 		11.5
(-3) 		17.1
(2.5) 		17.6
(3) 		15.1
(0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13533
Sequence Type Exemplar sequence
Representative Public ID F14H3.1 NCBI
Target Description F14H3.1 /REP_DB=WormBase Gene ID /WP=CE15826 /TR=O17809 /GB=CAB05480.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074645 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-10) (srj-10) mRNA, complete cds. 11/11 None
GENEFINDER00000013839 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16075366:16076539:-1 11/11 None
F14H3.1 ENSEMBL cdna:known chromosome:CEL140:V:16075348:16076539:-1 gene:F14H3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16075347-16076539(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol srj-10
Ensembl F14H3.1
Entrez Gene 184488 Entrez gene
SwissProt O17809 EMBL-EBI
WormBase CE15826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05480 Hypothetical protein F14H3.1 [Caenorhabditis elegans] ref|NP_507046.1| Serpentine Receptor, class J family member (srj-10) [Caenorhabditis elegans] 0.0
blast CAB05480 Hypothetical protein F14H3.1 [Caenorhabditis elegans] ref|NP_507046.1| Serpentine Receptor, class J family member (srj-10) [Caenorhabditis elegans] 1.0E-143
blast NP_503888 Serpentine Receptor, class J family member (srj-11) [Caenorhabditis elegans] gb|AAC48122.2| Serpentine receptor, class j protein 11 [Caenorhabditis elegans] 1.0E-117
blast CAE74633 Hypothetical protein CBG22428 [Caenorhabditis briggsae] 1.0E-117
blast NP_503888 Serpentine Receptor, class J family member (srj-11) [Caenorhabditis elegans] gb|AAC48122.2| Serpentine receptor, class j protein 11 [Caenorhabditis elegans] 3.0E-84
blast CAE74633 Hypothetical protein CBG22428 [Caenorhabditis briggsae] 7.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507046.1 7 10-32,53-75,90-112,125-147,196-218,245-267,282-304
F14H3.1 7 10-32,53-75,90-112,125-147,196-218,245-267,282-304
GENEFINDER00000013839 6 13-30,40-57,89-111,160-182,209-231,246-268
Sequence
Target Sequence 
>C. ELEGANS:188868_AT
ttcttggtcttttcattttcctcatttctcatggtattgtgtggagttcagtctgtgagc
ttttgctctatggagatcaaaaagttgctgactatatttataaacaattcatgaaggatt
atcatgttgattcacatggattattttttctaatgggtttattttatgatggaagctctg
agattgtgagaagaagctggggtggtattctaattttaacaggggtttctttttatgcag
cgcctctttatttcattctcgcttggaaaattgtgagaaaattagcaaatgataatccag
gagtatcagtgattacacagaaattgaacagacatttattcaaagctttagtagttcaga
cgctcatcccaatttgcatatgctttttcccctgtatggtcgcctggtacgggcctgcct
ttggtgtcaacttcggaaattggagtcgctatttgggtgctgttgcattttctgccttcc
ctgatttagatcccctcgcaattattttactgcttccctactatcgtaacaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGGTCTTTTCATTTTCCTCAT 666 689 401 Antisense
GTGGAGTTCAGTCTGTGAGCTTTTG 475 489 441 Antisense
ACAGGGGTTTCTTTTTATGCAGCGC 550 105 619 Antisense
TTTATGCAGCGCCTCTTTATTTCAT 187 673 632 Antisense
CTCTTTATTTCATTCTCGCTTGGAA 203 231 644 Antisense
TTTAGTAGTTCAGACGCTCATCCCA 165 673 747 Antisense
AATTTGCATATGCTTTTTCCCCTGT 187 175 771 Antisense
CTGCCTTTGGTGTCAACTTCGGAAA 327 237 815 Antisense
GGAGTCGCTATTTGGGTGCTGTTGC 384 517 842 Antisense
TTTAGATCCCCTCGCAATTATTTTA 409 673 885 Antisense
CTGCTTCCCTACTATCGTAACAAAC 99 237 910 Antisense
Sequence Source Affymetrix Proprietary Database