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[188867_s_at]

Description ZK669.1A /REP_DB=WormBase Gene ID /WP=CE06641 /TR=Q27267 /GB=CAA86847.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=N-chimaerin
Cluster 6grp_total > 08      4grp_total > 23      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 284.3
(2.6)
P 		117.5
(-3)
A 		121.8
(-2.9)
A 		295.1
(3)
A 		178
B 388.1
(3)
P 		111.4
(-3)
A 		140.2
(-2.4)
A 		181.3
(-1.5)
P 		277
C 228.5
(3)
P 		137.9
(-1.3)
A 		102.8
(-3)
M 		208.7
(2.1)
A 		126
avr 300.3
(3) 		122.3
(-3) 		121.6
(-3) 		228.4
(0.6) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 150.1
(3)
A 		129.3
(1.3)
A 		125.1
(1)
A 		122.3
(0.7)
A 		76.2
(-3)
A 		100.8
(-1)
A 		74
B 217.4
(3)
A 		108.2
(-1.2)
A 		116.1
(-0.9)
A 		117.2
(-0.9)
A 		61.4
(-3)
A 		90.8
(-1.9)
A 		156
C 244.9
(3)
P 		121.6
(-1.1)
A 		146.2
(-0.3)
A 		167.9
(0.4)
A 		80.3
(-2.5)
A 		65
(-3)
A 		180
avr 204.1
(3) 		119.7
(-0.9) 		129.1
(-0.4) 		135.8
(-0.1) 		72.6
(-3) 		85.5
(-2.4) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 103.5
(3)
P 		25.5
(-3)
A 		31.8
(-2.5)
A 		43.2
(-1.6)
A 		78
B 123.8
(3)
P 		27.5
(-3)
A 		32.5
(-2.7)
A 		38.6
(-2.3)
P 		96
C 75.7
(3)
P 		39.6
(-2.3)
A 		35.8
(-2.9)
M 		35.2
(-3)
A 		41
avr 101
(3) 		30.9
(-3) 		33.4
(-2.8) 		39
(-2.3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 27.7
(-1.8)
A 		46
(3)
A 		27.2
(-1.9)
A 		31
(-0.9)
A 		23
(-3)
A 		24.5
(-2.6)
A 		23
B 75.6
(3)
A 		36
(-1.7)
A 		28.2
(-2.6)
A 		31
(-2.3)
A 		25
(-3)
A 		33.8
(-2)
A 		51
C 90.8
(3)
P 		37.1
(-1.7)
A 		37.2
(-1.7)
A 		33.8
(-2)
A 		26
(-2.6)
A 		21.8
(-3)
A 		69
avr 64.7
(3) 		39.7
(-0.8) 		30.9
(-2.1) 		31.9
(-1.9) 		24.7
(-3) 		26.7
(-2.7) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188867_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5486
Sequence Type Exemplar sequence
Representative Public ID ZK669.1A NCBI
Target Description ZK669.1A /REP_DB=WormBase Gene ID /WP=CE06641 /TR=Q27267 /GB=CAA86847.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=N-chimaerin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063265(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063265 NCBI Caenorhabditis elegans ZK669.1a (N-chimaerin) mRNA, complete cds. 9/11 None
GENEFINDER00000025898 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7912271:7914776:-1 10/11 None
ZK669.1a ENSEMBL cdna:known chromosome:CEL140:II:7912026:7925279:-1 gene:ZK669.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063266 3/11 Cross Hyb Matching Probes None
SNAP00000025893 4/11 Cross Hyb Matching Probes None
SNAP00000025894 3/11 Cross Hyb Matching Probes None
ZK669.1b 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174278 2 1 NM_063265 173762_s_at (11), 188867_s_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7912664-7925276(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK669.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85468 Hypothetical protein ZK669.1a [Caenorhabditis elegans] emb|CAA86847.2| Hypothetical protein ZK669.1a [Caenorhabditis elegans] ref|NP_495666.2| ZK669.1a [Caenorhabditis elegans] 0.0
blast CAE59821 Hypothetical protein CBG03288 [Caenorhabditis briggsae] 0.0
blast CAA85469 Hypothetical protein ZK669.1b [Caenorhabditis elegans] emb|CAA86848.2| Hypothetical protein ZK669.1b [Caenorhabditis elegans] ref|NP_495667.2| ZK669.1b [Caenorhabditis elegans] 0.0
blast CAA85469 Hypothetical protein ZK669.1b [Caenorhabditis elegans] emb|CAA86848.2| Hypothetical protein ZK669.1b [Caenorhabditis elegans] ref|NP_495667.2| ZK669.1b [Caenorhabditis elegans] 8.0E-77
blast CAA85468 Hypothetical protein ZK669.1a [Caenorhabditis elegans] emb|CAA86847.2| Hypothetical protein ZK669.1a [Caenorhabditis elegans] ref|NP_495666.2| ZK669.1a [Caenorhabditis elegans] 8.0E-77
blast CAE59821 Hypothetical protein CBG03288 [Caenorhabditis briggsae] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 2.2E-65
Sequence
Target Sequence 
>C. ELEGANS:188867_S_AT
gaagagatattcttgcctccaactccagatattctgaaaacaacgaggaaacctgtggag
cagacaacatctcttcctaacccaaaatgtaagttttatccattaaacttgttaaataaa
atacccgttgaaagaatatcaagtggtagacgatcaaataacaatgagccaccaacaata
gttcaaagaaggaccaatgatatttcaagacgaagtgatatgggtgataagaggaagagt
tatacaacatcaattgtcattgcacctagagatggatcaccagatcacgttgatcaaatt
caaataatcgaacgggatgtatatgacaaaggagcttcattggagcaagataaggaaatg
tttgctgagggatcggtgggaaggacaatgcttctctttggcgaacgaatgtgtacagtc
tacggtggttcaaacaaacaatcatcggattccaaatcgaaatcaccgatttctgcaacg
ccaagcaaccgcagaagaggatttcgacgtggacgtagagccaacaccgattcggaaaca
acacggaatgaatacggttccgccgatgacgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGATATTCTTGCCTCCAACTC 262 339 1999 Antisense
TGCCTCCAACTCCAGATATTCTGAA 522 585 2012 Antisense
GTGGAGCAGACAACATCTCTTCCTA 2 491 2053 Antisense
CAACATCTCTTCCTAACCCAAAATG 185 189 2063 Antisense
AATGTTTGCTGAGGGATCGGTGGGA 281 163 2355 Antisense
TGCTTCTCTTTGGCGAACGAATGTG 49 579 2387 Antisense
GAATGTGTACAGTCTACGGTGGTTC 190 323 2405 Antisense
CGATTTCTGCAACGCCAAGCAACCG 522 247 2465 Antisense
GAAGAGGATTTCGACGTGGACGTAG 585 331 2492 Antisense
ACGTAGAGCCAACACCGATTCGGAA 587 93 2511 Antisense
GAATACGGTTCCGCCGATGACGATT 82 323 2548 Antisense
Sequence Source Affymetrix Proprietary Database