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[188866_at] 7TM receptor

Description F44G3.1 /REP_DB=WormBase Gene ID /WP=CE16033 /TR=O17872 /GB=CAB05513.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 81      4grp_total > 09      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 19.5
(-3)
A 		30.7
(-1.8)
A 		54.4
(0.8)
A 		74.3
(3)
A 		55
B 15.9
(-3)
A 		30.7
(-1.4)
A 		30.1
(-1.5)
A 		72.7
(3)
A 		57
C 16
(-2.2)
A 		29.1
(-1.3)
A 		5.7
(-3)
A 		86.5
(3)
M 		81
avr 17.1
(-3) 		30.2
(-1.7) 		30.1
(-1.7) 		77.8
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 32.1
(0.8)
A 		4.8
(-3)
A 		35.4
(1.2)
A 		33.2
(0.9)
A 		48.6
(3)
A 		4.6
(-3)
A 		44
B 12.3
(-3)
A 		41.1
(3)
A 		33
(1.3)
A 		17
(-2)
A 		31.6
(1)
A 		37.8
(2.3)
A 		29
C 6.4
(-2.8)
A 		30.8
(-1)
A 		4
(-3)
A 		84.8
(3)
A 		25.4
(-1.4)
A 		5.6
(-2.9)
A 		81
avr 16.9
(-2.8) 		25.6
(-1) 		24.1
(-1.3) 		45
(3) 		35.2
(1) 		16
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.1
(-2.7)
A 		6.7
(-3)
A 		14.2
(3)
A 		10.9
(0.4)
A 		8
B 5.1
(-3)
A 		7.6
(-1.6)
A 		7
(-1.9)
A 		15.5
(3)
A 		10
C 5.3
(-1.4)
A 		8.4
(0)
A 		2
(-3)
A 		14.6
(3)
M 		13
avr 5.8
(-3) 		7.6
(-1.6) 		7.7
(-1.6) 		13.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.9
(-0.9)
A 		1.7
(-2.7)
A 		7.7
(-0.1)
A 		8.4
(0.2)
A 		14.7
(3)
A 		1.1
(-3)
A 		14
B 4.3
(-3)
A 		13.7
(2.8)
A 		8
(-0.7)
A 		4.5
(-2.9)
A 		12.9
(2.3)
A 		14.1
(3)
A 		10
C 2.4
(-2.5)
A 		9.4
(0.1)
A 		1
(-3)
A 		17.1
(3)
A 		8.2
(-0.3)
A 		1.9
(-2.7)
A 		16
avr 4.2
(-3) 		8.3
(0.2) 		5.6
(-1.9) 		10
(1.5) 		11.9
(3) 		5.7
(-1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188866_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12803
Sequence Type Exemplar sequence
Representative Public ID F44G3.1 NCBI
Target Description F44G3.1 /REP_DB=WormBase Gene ID /WP=CE16033 /TR=O17872 /GB=CAB05513.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074657 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-103) (str-103) mRNA, complete cds. 11/11 None
SNAP00000003416 ENSEMBL cdna:SNAP chromosome:CEL140:V:16119950:16120699:-1 10/11 None
F44G3.1 ENSEMBL cdna:known chromosome:CEL140:V:16119946:16121284:-1 gene:F44G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16119945-16121284(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-103
Ensembl F44G3.1
Entrez Gene 185753 Entrez gene
SwissProt O17872 EMBL-EBI
WormBase CE16033 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 0.0
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 1.0E-121
blast CAB04640 Hypothetical protein R08H2.13 [Caenorhabditis elegans] ref|NP_506822.1| Seven TM Receptor family member (str-102) [Caenorhabditis elegans] 1.0E-113
blast CAB07344 Hypothetical protein F10A3.6 [Caenorhabditis elegans] ref|NP_507070.1| Seven TM Receptor family member (str-99) [Caenorhabditis elegans] 1.0E-105
blast CAA15965 Hypothetical protein Y6E2A.1 [Caenorhabditis elegans] ref|NP_506907.1| Y6E2A.1 [Caenorhabditis elegans] 4.0E-77
blast CAB07344 Hypothetical protein F10A3.6 [Caenorhabditis elegans] ref|NP_507070.1| Seven TM Receptor family member (str-99) [Caenorhabditis elegans] 1.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.9E-18
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.6E-26
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.1E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507058.1 7 10-32,45-64,93-115,136-158,203-225,255-277,287-309
F44G3.1 7 10-32,45-64,93-115,136-158,203-225,255-277,287-309
SNAP00000003416 4 29-51,99-121,151-173,183-205
Sequence
Target Sequence 
>C. ELEGANS:188866_AT
gaaatgggccccattgtggactttcctagtttttgccaattctgctatctggttcatcgt
gtgctattttgtaaacggtccaactccagtgaaagatgaaacttttcgattagaattcat
cagagcttattgcatgcagcctgaaaaatattcgtatgctggaccacaatttttctatga
tgacttgttcactggagagacaagaatccatattccatcgtttttctcttgcggtgtaat
gggctgcattatgatacttacaatttctgcgataacattttttggagcacagacctatca
acatataaaccgcttaagtgcaatatcaagatccgagaacaaagaactgcaaaaacaact
tttcaaaactttagtgatccaaacaatcattccaataatatttatgtatatcccagtaac
aattatgattcttttgccaatatttggtcttcaaattgagtcaactggaaatttcatacc
aatcgctgttgcgatatacccttgttttgaaccgcttgtcgcaatggtttgtattaaaca
ttttcgcaagagaataaccgactttctgacttgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGGGCCCCATTGTGGACTTTC 451 359 405 Antisense
TTTCCTAGTTTTTGCCAATTCTGCT 6 669 426 Antisense
CAATTCTGCTATCTGGTTCATCGTG 156 181 441 Antisense
TGTAAACGGTCCAACTCCAGTGAAA 710 549 474 Antisense
ATCAGAGCTTATTGCATGCAGCCTG 431 27 523 Antisense
GAATCCATATTCCATCGTTTTTCTC 134 331 608 Antisense
CGTTTTTCTCTTGCGGTGTAATGGG 206 247 623 Antisense
AATTTCATACCAATCGCTGTTGCGA 291 175 874 Antisense
CTGTTGCGATATACCCTTGTTTTGA 226 239 890 Antisense
CTTGTTTTGAACCGCTTGTCGCAAT 88 219 905 Antisense
GAATAACCGACTTTCTGACTTGCAA 378 325 956 Antisense
Sequence Source Affymetrix Proprietary Database