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[188865_at] transposase

Description B0545.4 /REP_DB=WormBase Gene ID /WP=CE17357 /TR=O76665 /GB=AAC26918.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 95      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 20.3
(2.5)
A 		22.2
(3)
A 		20.7
(2.6)
A 		1.4
(-3)
A 		21
B 7
(-3)
A 		15.7
(-1.9)
A 		53.7
(3)
A 		8.4
(-2.8)
A 		47
C 30.8
(-2)
A 		33.5
(-1.7)
A 		22.1
(-3)
A 		76.1
(3)
P 		54
avr 19.4
(-3) 		23.8
(-0.9) 		32.2
(3) 		28.6
(1.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 50.5
(3)
P 		27.7
(-1.2)
A 		18
(-3)
A 		46.2
(2.2)
A 		41.1
(1.3)
P 		44
(1.8)
A 		33
B 22.1
(-1.5)
A 		11.6
(-3)
A 		25.4
(-1.1)
A 		54.7
(3)
A 		32.7
(-0.1)
A 		37.5
(0.6)
M 		43
C 15.5
(-1.7)
A 		26.4
(-0.6)
A 		26.1
(-0.6)
A 		3.3
(-3)
A 		60.3
(3)
P 		25.9
(-0.6)
A 		57
avr 29.4
(-1) 		21.9
(-3) 		23.2
(-2.7) 		34.7
(0.4) 		44.7
(3) 		35.8
(0.7) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.4
(3)
A 		4.8
(0.8)
A 		5.4
(1.3)
A 		0.2
(-3)
A 		7
B 2.2
(-2.8)
A 		3.9
(-1.8)
A 		12.5
(3)
A 		1.8
(-3)
A 		11
C 10.2
(-0.1)
A 		9.6
(-0.8)
A 		7.7
(-3)
A 		12.8
(3)
P 		5
avr 6.6
(-0.2) 		6.1
(-1) 		8.5
(3) 		4.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.3
(0.8)
P 		9.9
(1.2)
A 		3.9
(-3)
A 		11.7
(2.5)
A 		12.4
(3)
P 		10.7
(1.8)
A 		9
B 7.7
(-0.8)
A 		3.9
(-3)
A 		6.2
(-1.7)
A 		14.5
(3)
A 		13.3
(2.3)
A 		14
(2.7)
M 		11
C 5.8
(-1.4)
A 		8.1
(-0.6)
A 		6.6
(-1.1)
A 		0.7
(-3)
A 		19.5
(3)
P 		8.7
(-0.4)
A 		19
avr 7.6
(-1.7) 		7.3
(-1.9) 		5.6
(-3) 		9
(-0.9) 		15.1
(3) 		11.1
(0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11135
Sequence Type Exemplar sequence
Representative Public ID B0545.4 NCBI
Target Description B0545.4 /REP_DB=WormBase Gene ID /WP=CE17357 /TR=O76665 /GB=AAC26918.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067461 NCBI Caenorhabditis elegans B0545.4 (transposase) mRNA, complete cds. 11/11 None
SNAP00000044543 ENSEMBL cdna:SNAP chromosome:CEL140:IV:104598:109684:-1 10/11 None
GENEFINDER00000044546 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:109054:109684:-1 10/11 None
B0545.4 ENSEMBL cdna:known chromosome:CEL140:IV:109054:109943:-1 gene:B0545.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:109053-109943(-) 98.83 100.0
Public Domain and Genome References
Gene Title transposase
Ensembl B0545.4
Entrez Gene 182029 Entrez gene
SwissProt O76665 EMBL-EBI
WormBase CE17357 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46983 protein dimerization activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26918 Hypothetical protein B0545.4 [Caenorhabditis elegans] ref|NP_499862.1| B0545.4 [Caenorhabditis elegans] 1.0E-143
blast AAC26918 Hypothetical protein B0545.4 [Caenorhabditis elegans] ref|NP_499862.1| B0545.4 [Caenorhabditis elegans] 1.0E-106
blast AAC26918 Hypothetical protein B0545.4 [Caenorhabditis elegans] ref|NP_499862.1| B0545.4 [Caenorhabditis elegans] 1.0E-96
blast CAA90614 Hypothetical protein K09A11.1 [Caenorhabditis elegans] ref|NP_510202.2| K09A11.1 [Caenorhabditis elegans] 8.0E-46
blast CAA90614 Hypothetical protein K09A11.1 [Caenorhabditis elegans] ref|NP_510202.2| K09A11.1 [Caenorhabditis elegans] 4.0E-44
blast AAC46515 Hypothetical protein C10A4.1 [Caenorhabditis elegans] ref|NP_509255.1| C10A4.1 [Caenorhabditis elegans] 4.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR008906 EMBL-EBI HAT dimerisation 4.7E-26
Pfam IPR008906 EMBL-EBI HAT dimerisation 4.7E-26
Sequence
Target Sequence 
>C. ELEGANS:188865_AT
aactttttcaggatatctactcggatcaggatgaagtgttggagtttattagagccgtcg
aaaaggaagacgatgagccatacagcaacgtagattctgaatatgatgactttggtgatt
catcagaagtaaccgaacctgttgcgaaaattcagaaaacggactttgagctttacattc
aggagaagatcaagtcacgtggaaagcatatagcgttaactgatcaaagtttaacagtga
aaatggaggtcacccgatatctttctactgcagtagaatcaatttttcccagagattact
ggttgaatcctttgagtaaatcttcataccctcgtctttcccagtttgctcgtcgcttcg
tcatttgcccaacaggttccagcgaagtcgaaagactattttcaacggcgggaactattc
tgacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTTTCAGGATATCTACTCGGA 5 123 185 Antisense
GTTGGAGTTTATTAGAGCCGTCGAA 169 435 222 Antisense
GAAGACGATGAGCCATACAGCAACG 653 339 250 Antisense
CAGAAGTAACCGAACCTGTTGCGAA 181 189 308 Antisense
ACGGACTTTGAGCTTTACATTCAGG 421 93 343 Antisense
AATGGAGGTCACCCGATATCTTTCT 369 163 426 Antisense
CCCGATATCTTTCTACTGCAGTAGA 589 259 437 Antisense
GCAGTAGAATCAATTTTTCCCAGAG 547 311 454 Antisense
TGAGTAAATCTTCATACCCTCGTCT 430 567 497 Antisense
CCCAACAGGTTCCAGCGAAGTCGAA 294 255 552 Antisense
TCAACGGCGGGAACTATTCTGACTA 448 629 586 Antisense
Sequence Source Affymetrix Proprietary Database