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[188863_s_at]

Description ZK792.4 /REP_DB=WormBase Gene ID /WP=CE27420 /TR=Q23595 /GB=CAA92635.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ankyrin like
Cluster 4grp_high_8_8 > 35      6grp_total > 15      4grp_total > 44      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 321.5
(2.4)
P 		324
(3)
P 		300.8
(-3)
A 		303
(-2.4)
P 		23
B 374.1
(2.2)
P 		391.9
(3)
P 		262.9
(-3)
P 		327.4
(0)
P 		129
C 369.8
(1.9)
P 		398.8
(3)
P 		246.4
(-3)
P 		252.6
(-2.8)
P 		152
avr 355.1
(2) 		371.6
(3) 		270
(-3) 		294.3
(-1.6) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 396.7
(3)
A 		352.1
(1.6)
P 		211.4
(-3)
A 		218.5
(-2.8)
M 		257.2
(-1.5)
A 		211.3
(-3)
A 		185
B 367.9
(1.5)
M 		420.4
(3)
M 		259.1
(-1.7)
A 		314.5
(-0.1)
M 		259.2
(-1.7)
P 		213.1
(-3)
A 		207
C 407.9
(3)
A 		375.4
(1.8)
A 		360.7
(1.3)
M 		265.7
(-2.2)
P 		289.6
(-1.3)
A 		244.1
(-3)
P 		164
avr 390.8
(3) 		382.6
(2.7) 		277.1
(-1.1) 		266.2
(-1.5) 		268.7
(-1.4) 		222.8
(-3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 117
(3)
P 		70.3
(-0.9)
P 		78.6
(-0.2)
A 		44.4
(-3)
P 		73
B 119.3
(3)
P 		96.8
(0.7)
P 		60.9
(-3)
P 		69.8
(-2.1)
P 		58
C 122.4
(3)
P 		114.7
(2.4)
P 		85.9
(0.3)
P 		42.6
(-3)
P 		80
avr 119.6
(3) 		93.9
(0.7) 		75.1
(-1) 		52.3
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 73.1
(-0.9)
A 		125.2
(3)
P 		46
(-3)
A 		55.4
(-2.3)
M 		77.6
(-0.6)
A 		51.4
(-2.6)
A 		79
B 128
(2.1)
M 		139.9
(3)
M 		62.9
(-3)
A 		83.3
(-1.4)
M 		105.3
(0.3)
P 		79.4
(-1.7)
A 		77
C 151.2
(3)
A 		114.6
(0.8)
A 		91.8
(-0.6)
M 		53.4
(-3)
P 		93.7
(-0.5)
A 		81.7
(-1.3)
P 		98
avr 117.4
(2.1) 		126.6
(3) 		66.9
(-2.7) 		64
(-3) 		92.2
(-0.3) 		70.8
(-2.3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188863_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9447
Sequence Type Exemplar sequence
Representative Public ID ZK792.4 NCBI
Target Description ZK792.4 /REP_DB=WormBase Gene ID /WP=CE27420 /TR=Q23595 /GB=CAA92635.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ankyrin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028449(11), NM_001028448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028449 NCBI Caenorhabditis elegans ZK792.4b (ZK792.4) mRNA, complete cds. 11/11 None
NM_001028448 NCBI Caenorhabditis elegans ZK792.4a (ZK792.4) mRNA, complete cds. 11/11 None
SNAP00000023872 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11678633:11680187:-1 11/11 None
GENEFINDER00000023876 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11678633:11681960:-1 11/11 None
ZK792.4b ENSEMBL cdna:known chromosome:CEL140:IV:11678410:11681975:-1 gene:ZK792.4 11/11 None
ZK792.4a ENSEMBL cdna:known chromosome:CEL140:IV:11678633:11681975:-1 gene:ZK792.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11678638-11681169(-) 92.41 100.0
Public Domain and Genome References
Ensembl ZK792.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60770 Hypothetical protein ZK792.4b [Caenorhabditis elegans] ref|NP_001023620.1| ZK792.4b [Caenorhabditis elegans] 0.0
blast CAA92635 Hypothetical protein ZK792.4a [Caenorhabditis elegans] ref|NP_001023619.1| ZK792.4a [Caenorhabditis elegans] 0.0
blast CAE62072 Hypothetical protein CBG06095 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 3.7E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.25
Pfam IPR002110 EMBL-EBI Ankyrin 0.61
Pfam IPR002110 EMBL-EBI Ankyrin 14.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.5
Pfam IPR002110 EMBL-EBI Ankyrin 9.0E-9
Pfam IPR002110 EMBL-EBI Ankyrin 3.7E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.25
Pfam IPR002110 EMBL-EBI Ankyrin 0.61
Pfam IPR002110 EMBL-EBI Ankyrin 14.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.5
Pfam IPR002110 EMBL-EBI Ankyrin 9.0E-9
Pfam IPR002110 EMBL-EBI Ankyrin 0.61
Pfam IPR002110 EMBL-EBI Ankyrin 14.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.5
Pfam IPR002110 EMBL-EBI Ankyrin 9.0E-9
Pfam IPR002110 EMBL-EBI Ankyrin 9.6
Pfam IPR002110 EMBL-EBI Ankyrin 0.61
Pfam IPR002110 EMBL-EBI Ankyrin 14.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.5
Pfam IPR002110 EMBL-EBI Ankyrin 9.0E-9
Sequence
Target Sequence 
>C. ELEGANS:188863_S_AT
gaggaaatactccacttcatttggctgcaatgaataatcatttggatgcagcactttata
tgcttgaaaacggtgcggatccagcgttgatcaatgccaatggtcactctcctcaatcga
ttgcagctctccggcatcacagagaaatggaaagacttgtggcagcttatcaagggaagc
gaagaaagagcaagtcaaagaagaagtcacaatcgatgcatgatctatcacaatttgctt
ctccaaatccgaatggtccaattagtccaggaggtgtcacgagttattcaagtaatacaa
acggatttgagacggctgaaagaagagcattctcgccacgtgaattaagttcggggtact
cgagtaatggagatgtggctgagtcgattaaaagcgaggcagaaatcgttcgccatcgcc
tccgattcattgaagatgacattgattccctccgagatactggtgctcaaacagaaatgg
atcttcttcagactcatgtcaaagtgcttgatgataagacatgggctggtctcggtcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAAATACTCCACTTCATTTGGC 643 403 908 Antisense
AAACGGTGCGGATCCAGCGTTGATC 258 127 975 Antisense
ATCAATGCCAATGGTCACTCTCCTC 220 27 997 Antisense
GATCTATCACAATTTGCTTCTCCAA 675 419 1129 Antisense
GCTTCTCCAAATCCGAATGGTCCAA 103 307 1144 Antisense
GAGCATTCTCGCCACGTGAATTAAG 319 389 1232 Antisense
GAGGCAGAAATCGTTCGCCATCGCC 496 405 1303 Antisense
TGAAGATGACATTGATTCCCTCCGA 452 575 1338 Antisense
TTCCCTCCGAGATACTGGTGCTCAA 313 697 1353 Antisense
ATGGATCTTCTTCAGACTCATGTCA 644 51 1384 Antisense
AAGACATGGGCTGGTCTCGGTCTTT 542 151 1423 Antisense
Sequence Source Affymetrix Proprietary Database