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[188862_s_at] ATP-binding

Description C56E6.5 /REP_DB=WormBase Gene ID /WP=CE04277 /TR=Q18900 /GB=AAA81092.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATP-binding
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_high_8_8 > 37      6grp_highest_nonorm > 90      6grp_total > 03      4grp_total > 42      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 67.4
(-1.9)
P 		83.2
(2.7)
P 		84.2
(3)
P 		63.5
(-3)
P 		21
B 42
(-3)
P 		124.4
(3)
P 		43.4
(-2.9)
P 		49.8
(-2.4)
P 		82
C 24.5
(-3)
A 		152.5
(3)
P 		114.5
(1.2)
P 		113
(1.1)
P 		128
avr 44.6
(-3) 		120
(3) 		80.7
(-0.1) 		75.4
(-0.5) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 170.4
(3)
P 		121.4
(0.7)
P 		160.6
(2.5)
P 		111
(0.2)
P 		118.8
(0.6)
P 		43.9
(-3)
P 		127
B 167.9
(3)
P 		161.8
(2.7)
P 		66.3
(-1.8)
P 		124.2
(0.9)
P 		99.3
(-0.2)
P 		40
(-3)
P 		128
C 109.4
(-0.6)
P 		197.6
(3)
P 		81.2
(-1.7)
P 		132.8
(0.4)
P 		108.6
(-0.6)
P 		49.1
(-3)
P 		149
avr 149.2
(2.4) 		160.3
(3) 		102.7
(0) 		122.7
(1.1) 		108.9
(0.3) 		44.3
(-3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 24.6
(3)
P 		18.1
(0.5)
P 		22
(2)
P 		9.3
(-3)
P 		15
B 13.4
(-2)
P 		30.7
(3)
P 		10.1
(-3)
P 		10.6
(-2.9)
P 		21
C 8.1
(-3)
A 		43.8
(3)
P 		39.9
(2.3)
P 		19.1
(-1.2)
P 		36
avr 15.4
(-2.2) 		30.9
(3) 		24
(0.7) 		13
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 31.4
(0.8)
P 		43.2
(3)
P 		35
(1.5)
P 		28.2
(0.2)
P 		35.9
(1.7)
P 		10.7
(-3)
P 		33
B 58.4
(3)
P 		53.9
(2.4)
P 		16.1
(-2.8)
P 		32.9
(-0.5)
P 		40.3
(0.5)
P 		14.9
(-3)
P 		44
C 40.6
(0.3)
P 		60.3
(3)
P 		20.7
(-2.4)
P 		26.7
(-1.6)
P 		35.1
(-0.4)
P 		16.4
(-3)
P 		44
avr 43.5
(1.6) 		52.5
(3) 		23.9
(-1.5) 		29.3
(-0.6) 		37.1
(0.6) 		14
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188862_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5736
Sequence Type Exemplar sequence
Representative Public ID C56E6.5 NCBI
Target Description C56E6.5 /REP_DB=WormBase Gene ID /WP=CE04277 /TR=Q18900 /GB=AAA81092.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATP-binding
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062919 NCBI Caenorhabditis elegans C56E6.5 (ATP-binding) mRNA, complete cds. 11/11 None
GENEFINDER00000033868 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6526318:6531512:-1 11/11 None
C56E6.5 ENSEMBL cdna:known chromosome:CEL140:II:6528883:6531556:-1 gene:C56E6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033860 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6528900-6531509(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP-binding
Ensembl C56E6.5
Entrez Gene 174078 Entrez gene
SwissProt Q18900 EMBL-EBI
WormBase CE04277 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81092 Hypothetical protein C56E6.5 [Caenorhabditis elegans] ref|NP_495320.1| C56E6.5 [Caenorhabditis elegans] 0.0
blast CAE59340 Hypothetical protein CBG02685 [Caenorhabditis briggsae] 0.0
blast CAE59339 Hypothetical protein CBG02684 [Caenorhabditis briggsae] 0.0
blast EAA01062 ENSANGP00000019844 [Anopheles gambiae str. PEST] ref|XP_320996.2| ENSANGP00000019844 [Anopheles gambiae str. PEST] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003533 EMBL-EBI Doublecortin 1.0E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495320.1 6 334-356,371-393,414-436,446-468,475-497,559-581
C56E6.5 6 334-356,371-393,414-436,446-468,475-497,559-581
GENEFINDER00000033868 6 334-356,371-393,414-436,446-468,475-497,558-580
Sequence
Target Sequence 
>C. ELEGANS:188862_S_AT
aaagactagtctccttagcttcagagaatgtaatttatattgccagacgacaagtttaac
aatattttcaattttcttcctcgtatactcatgtattcagtcttctctattcgttggtat
agttttatggtcattcaagtcagaagctatgtttcaaatcagtttgaatctatttctact
ttctattttttcattctctatattcacaatctgtgcgagatatttgaaaaattgctcaaa
cattgtaattttacaaacaattattatcttggcatttttcgtttctggaaatggagtaac
aggaactacaacatcttcttctattcaatattacataggtgtaatcaatccattcaatta
ttccaattttcttctctcaaaacttttgtcaagttctattgataacgaggaatgtacatt
cccttcttacatgtgcaaactatcaatgaatcttcattcagatttatacccaccatggta
tgctccaaacgatgtattcacaaatttcgctattcttttctgtctaagtctcacttttct
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGACTAGTCTCCTTAGCTTCAGA 429 121 1191 Antisense
AATTTTCTTCCTCGTATACTCATGT 688 173 1260 Antisense
TATTCAGTCTTCTCTATTCGTTGGT 507 661 1284 Antisense
TCTACTTTCTATTTTTTCATTCTCT 46 615 1365 Antisense
TATCTTGGCATTTTTCGTTTCTGGA 194 659 1455 Antisense
AACTACAACATCTTCTTCTATTCAA 46 141 1494 Antisense
TGTACATTCCCTTCTTACATGTGCA 568 559 1603 Antisense
CTTCATTCAGATTTATACCCACCAT 453 221 1642 Antisense
TACCCACCATGGTATGCTCCAAACG 294 649 1657 Antisense
AAATTTCGCTATTCTTTTCTGTCTA 693 115 1692 Antisense
TTTCTGTCTAAGTCTCACTTTTCTC 491 671 1707 Antisense
Sequence Source Affymetrix Proprietary Database