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[188861_at] 7tm receptor

Description C06B8.4 /REP_DB=WormBase Gene ID /WP=CE07972 /TR=O17571 /GB=CAB03847.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7tm receptor
Cluster 6grp_total > 43      4grp_total > 26      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 2.8
(-3)
A 		23.2
(0.7)
A 		35.7
(3)
A 		8.7
(-1.9)
A 		33
B 21.9
(0.7)
A 		32.1
(3)
A 		16.8
(-0.4)
A 		5.3
(-3)
A 		27
C 23.2
(-1.4)
A 		16.1
(-1.9)
A 		2.6
(-3)
A 		78.5
(3)
A 		76
avr 16
(-3) 		23.8
(0.2) 		18.4
(-2) 		30.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.5
(-2.6)
A 		2.2
(-3)
A 		4.8
(-2.5)
A 		25.5
(1.4)
A 		34
(3)
A 		4.1
(-2.6)
A 		32
B 22.7
(2.3)
A 		14
(-0.1)
A 		25.2
(3)
A 		5.7
(-2.3)
A 		3.3
(-3)
A 		12.1
(-0.6)
A 		22
C 19.3
(-0.1)
A 		8.6
(-2)
A 		36.7
(3)
A 		2.8
(-3)
A 		2.9
(-3)
A 		5.7
(-2.5)
A 		34
avr 15.5
(0.3) 		8.3
(-2.6) 		22.2
(3) 		11.3
(-1.4) 		13.4
(-0.5) 		7.3
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1
(-3)
A 		5
(-0.1)
A 		9.3
(3)
A 		1.3
(-2.8)
A 		8
B 7
(2.2)
A 		7.9
(3)
A 		3.9
(-0.5)
A 		1.1
(-3)
A 		7
C 7.7
(0.3)
A 		4.6
(-1.2)
A 		0.9
(-3)
A 		13.2
(3)
A 		12
avr 5.2
(-0.3) 		5.8
(3) 		4.7
(-3) 		5.2
(-0.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		0.8
(-3)
A 		1
(-2.9)
A 		6.5
(0.6)
A 		10.2
(3)
A 		1
(-2.9)
A 		9
B 7.9
(3)
A 		4.7
(0.1)
A 		6.1
(1.4)
A 		1.5
(-2.8)
A 		1.3
(-3)
A 		4.5
(-0.1)
A 		7
C 7.2
(1.6)
A 		2.6
(-1.6)
A 		9.3
(3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		1.9
(-2.1)
A 		9
avr 5.3
(2.6) 		2.7
(-2.6) 		5.5
(3) 		2.9
(-2.2) 		4.1
(0.2) 		2.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188861_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14525
Sequence Type Exemplar sequence
Representative Public ID C06B8.4 NCBI
Target Description C06B8.4 /REP_DB=WormBase Gene ID /WP=CE07972 /TR=O17571 /GB=CAB03847.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7tm receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074456 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-264) (str-264) mRNA, complete cds. 11/11 None
GENEFINDER00000044332 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15493653:15495187:-1 11/11 None
C06B8.4 ENSEMBL cdna:known chromosome:CEL140:V:15493653:15495187:-1 gene:C06B8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044321 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15493652-15495187(-) 98.27 100.0
Public Domain and Genome References
Gene Title 7tm receptor
Gene Symbol str-264
Ensembl C06B8.4
Entrez Gene 182299 Entrez gene
SwissProt O17571 EMBL-EBI
WormBase CE07972 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03847 Hypothetical protein C06B8.4 [Caenorhabditis elegans] ref|NP_506857.1| Seven TM Receptor family member (str-264) [Caenorhabditis elegans] 1.0E-163
blast CAB03847 Hypothetical protein C06B8.4 [Caenorhabditis elegans] ref|NP_506857.1| Seven TM Receptor family member (str-264) [Caenorhabditis elegans] 1.0E-161
blast CAD90179 Hypothetical protein F59A1.14 [Caenorhabditis elegans] ref|NP_001023998.1| Seven TM Receptor family member (str-93) [Caenorhabditis elegans] 1.0E-70
blast CAB04535 Hypothetical protein F59A1.3 [Caenorhabditis elegans] ref|NP_507473.1| Seven TM Receptor family member (str-92) [Caenorhabditis elegans] 4.0E-70
blast CAD90179 Hypothetical protein F59A1.14 [Caenorhabditis elegans] ref|NP_001023998.1| Seven TM Receptor family member (str-93) [Caenorhabditis elegans] 2.0E-69
blast CAB04535 Hypothetical protein F59A1.3 [Caenorhabditis elegans] ref|NP_507473.1| Seven TM Receptor family member (str-92) [Caenorhabditis elegans] 9.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.3E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.3E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506857.1 6 4-26,39-56,84-106,119-141,198-220,253-275
C06B8.4 6 4-26,39-56,84-106,119-141,198-220,253-275
GENEFINDER00000044332 6 4-26,39-56,84-106,119-141,197-219,252-274
Sequence
Target Sequence 
>C. ELEGANS:188861_AT
acttgctggcttttcattttgtctatcgatatttggcagatcttaaacccgatcaactct
acttttttacattcccatattctctaattttcactggaattttctcgtttatgacattaa
actggtggttgtcagctgtattttttgctggggaaagtggatctgtagatgaatatattg
gctcaaatatgcttcaaaaattcaatttaacgccggtggaattctcttacatttcgtcga
tattctatgtaaaaaagaatctccaaactggagttgaagaactgagtttacacgattttt
tgcttctgatcaatttgatgttcataattgacacgggttttcttataatcggatattgtt
ggttaaagcttcagaaagtattctcccataccaccaagcaatacctatcactatccaaac
gaactctagaaatgcaaactcaactcttcaaatgcattgttgctcaaactctattcccaa
tgtttttcttgctcatcccatcaggatgtattctgctcttcccattatttaagtttgagc
cagggcctgtcgaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGCTGGCTTTTCATTTTGTCTA 148 105 308 Antisense
TCTTAAACCCGATCAACTCTACTTT 4 615 348 Antisense
ACTCTACTTTTTTACATTCCCATAT 17 101 363 Antisense
ATTCCCATATTCTCTAATTTTCACT 615 7 378 Antisense
TTAACGCCGGTGGAATTCTCTTACA 74 683 514 Antisense
ATTCTCTTACATTTCGTCGATATTC 686 9 528 Antisense
GAGTTTACACGATTTTTTGCTTCTG 301 397 591 Antisense
ATACCACCAAGCAATACCTATCACT 699 21 695 Antisense
GCATTGTTGCTCAAACTCTATTCCC 660 307 761 Antisense
ATCAGGATGTATTCTGCTCTTCCCA 708 27 807 Antisense
GTTTGAGCCAGGGCCTGTCGAAACA 506 449 840 Antisense
Sequence Source Affymetrix Proprietary Database