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[188860_at] 7TM receptor

Description R11D1.5 /REP_DB=WormBase Gene ID /WP=CE06310 /TR=Q21936 /GB=CAA99903.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 54      4grp_total > 18      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 42.3
(-2)
M 		21.8
(-3)
A 		52.3
(-1.4)
A 		139.3
(3)
P 		118
B 40.6
(-1.6)
A 		69.3
(2.2)
A 		30.5
(-3)
A 		74.9
(3)
P 		44
C 23.4
(-1.4)
A 		52
(1.2)
A 		5.2
(-3)
A 		72.8
(3)
P 		68
avr 35.4
(-2.4) 		47.7
(-1.3) 		29.3
(-3) 		95.7
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 37.5
(0.1)
A 		6.3
(-3)
A 		66.2
(3)
P 		24.2
(-1.2)
A 		36.3
(0)
A 		47.6
(1.1)
M 		60
B 32.3
(0.8)
A 		46.1
(3)
M 		37.5
(1.6)
A 		7.9
(-3)
A 		46.1
(3)
A 		29
(0.3)
A 		38
C 13.8
(-1.7)
A 		36.9
(0.8)
A 		57.7
(3)
A 		39
(1)
A 		1.2
(-3)
A 		41.9
(1.3)
P 		57
avr 27.9
(-2.2) 		29.8
(-1.8) 		53.8
(3) 		23.7
(-3) 		27.9
(-2.2) 		39.5
(0.1) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15.4
(1.1)
M 		4.7
(-3)
A 		13.7
(0.4)
A 		20.4
(3)
P 		16
B 13
(0.5)
A 		17.1
(3)
A 		7.1
(-3)
A 		16
(2.3)
P 		10
C 7.8
(-0.3)
A 		14.9
(3)
A 		1.8
(-3)
A 		12.3
(1.8)
P 		13
avr 12.1
(0.2) 		12.2
(0.2) 		7.5
(-3) 		16.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.9
(-0.7)
A 		2.2
(-3)
A 		14.4
(3)
P 		6.1
(-1.1)
A 		11
(1.3)
A 		11.6
(1.6)
M 		12
B 11.2
(0.3)
A 		15.3
(1.8)
M 		9.1
(-0.5)
A 		2.1
(-3)
A 		18.7
(3)
A 		10.8
(0.1)
A 		17
C 5.1
(-1)
A 		11.3
(1.6)
A 		14.7
(3)
A 		7.9
(0.1)
A 		0.4
(-3)
A 		14
(2.7)
P 		14
avr 7.7
(-1.1) 		9.6
(0.5) 		12.7
(3) 		5.4
(-3) 		10
(0.8) 		12.1
(2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13437
Sequence Type Exemplar sequence
Representative Public ID R11D1.5 NCBI
Target Description R11D1.5 /REP_DB=WormBase Gene ID /WP=CE06310 /TR=Q21936 /GB=CAA99903.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073775 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-178) (str-178) mRNA, complete cds. 11/11 None
SNAP00000040853 ENSEMBL cdna:SNAP chromosome:CEL140:V:12717093:12718006:-1 9/11 None
GENEFINDER00000040868 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12717093:12718983:-1 11/11 None
R11D1.5 ENSEMBL cdna:known chromosome:CEL140:V:12717093:12718983:-1 gene:R11D1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12717092-12718983(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-178
Ensembl R11D1.5
Entrez Gene 187806 Entrez gene
SwissProt Q21936 EMBL-EBI
WormBase CE06310 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99903 Hypothetical protein R11D1.5 [Caenorhabditis elegans] ref|NP_506176.1| Seven TM Receptor family member (str-178) [Caenorhabditis elegans] 0.0
blast CAE63973 Hypothetical protein CBG08563 [Caenorhabditis briggsae] 1.0E-160
blast AAA83330 Seven tm receptor protein 177 [Caenorhabditis elegans] ref|NP_505383.2| Seven TM Receptor family member (str-177) [Caenorhabditis elegans] 8.0E-79
blast AAA83330 Seven tm receptor protein 177 [Caenorhabditis elegans] ref|NP_505383.2| Seven TM Receptor family member (str-177) [Caenorhabditis elegans] 3.0E-78
blast CAA99903 Hypothetical protein R11D1.5 [Caenorhabditis elegans] ref|NP_506176.1| Seven TM Receptor family member (str-178) [Caenorhabditis elegans] 4.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.5E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.5E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.5E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506176.1 7 15-34,41-63,98-120,133-155,229-251,280-302,312-334
R11D1.5 7 15-34,41-63,98-120,133-155,229-251,280-302,312-334
SNAP00000040853 2 74-96,101-123
GENEFINDER00000040868 7 15-34,41-63,98-120,133-155,223-245,274-296,306-328
Sequence
Target Sequence 
>C. ELEGANS:188860_AT
gaggaatggctgtgctctggtttgttattgtaagtgaggattttaaatttcgaaaaaaat
taatggaagttgagataagcgctgtagctatttctgaaaacttccttggatcttcaacta
ttactgtaatatactttggtctcaattgctactttaaaatacgggaaataatgaactcaa
cggcaggaaacttttcaaaaagcattcagcgtcagttgttccgagctttagtaatacagg
cggcaattcctctactcctactctatataccatgctcaattgtgttcatctgtcctttaa
ttcaagttgatcttggaaatatgagtgcatttattagtgtatcggttgccgtttatccag
caattgacccactacctactttgttgattatcaaaaattataggagagctaccattgaaa
ttttcacaaaaactgtgagacttcttcgtgaagcaccatcttccacaattgctttggttc
atcgatcatctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAATGGCTGTGCTCTGGTTTGT 326 403 623 Antisense
GAAAACTTCCTTGGATCTTCAACTA 199 353 718 Antisense
GCATTCAGCGTCAGTTGTTCCGAGC 50 309 824 Antisense
GTAATACAGGCGGCAATTCCTCTAC 119 463 853 Antisense
TCCTACTCTATATACCATGCTCAAT 522 591 878 Antisense
TGCTCAATTGTGTTCATCTGTCCTT 20 581 895 Antisense
GTGTATCGGTTGCCGTTTATCCAGC 511 485 959 Antisense
ACCCACTACCTACTTTGTTGATTAT 362 89 989 Antisense
GAGACTTCTTCGTGAAGCACCATCT 613 393 1059 Antisense
GAAGCACCATCTTCCACAATTGCTT 232 341 1072 Antisense
TGCTTTGGTTCATCGATCATCTAAT 507 579 1092 Antisense
Sequence Source Affymetrix Proprietary Database