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[188859_at] dynein like

Description M18.2 /REP_DB=WormBase Gene ID /WP=CE06194 /TR=SW:Q21557 /GB=CAA92827.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=dynein like
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 03      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 51      6grp_total > 34      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 834
1 2 3 4 range
A 1031.8
(3)
P 		649.6
(-1.3)
P 		501.7
(-3)
P 		512.3
(-2.9)
P 		530
B 1234.8
(3)
P 		660.8
(-1.1)
P 		592.7
(-1.6)
P 		400.9
(-3)
P 		834
C 1230.3
(3)
P 		724.2
(-0.8)
P 		629.2
(-1.5)
P 		430.3
(-3)
P 		800
avr 1165.6
(3) 		678.2
(-1.1) 		574.5
(-1.9) 		447.8
(-3) 		718

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 583.5
(-0.4)
P 		649.6
(0.5)
P 		815.7
(3)
P 		558.9
(-0.8)
P 		506.8
(-1.6)
P 		410.2
(-3)
P 		406
B 722.5
(3)
P 		638.6
(1.1)
P 		576.7
(-0.3)
P 		456.3
(-3)
P 		565
(-0.5)
P 		499.7
(-2)
P 		266
C 868.2
(3)
P 		604
(-0.7)
P 		562.8
(-1.3)
P 		445.1
(-3)
P 		504.3
(-2.2)
P 		637.2
(-0.3)
P 		423
avr 724.7
(3) 		630.7
(0.6) 		651.7
(1.2) 		486.8
(-3) 		525.4
(-2) 		515.7
(-2.3) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 375.7
(3)
P 		141
(-1.7)
P 		131.2
(-1.9)
P 		75
(-3)
P 		301
B 393.8
(3)
P 		163.2
(-1.5)
P 		137.3
(-2)
P 		85.4
(-3)
P 		308
C 407.3
(3)
P 		208.2
(-0.6)
P 		219.3
(-0.4)
P 		72.6
(-3)
P 		335
avr 392.3
(3) 		170.8
(-1.2) 		162.6
(-1.4) 		77.7
(-3) 		315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 107.6
(-2.6)
P 		231
(3)
P 		177.6
(0.6)
P 		141.7
(-1.1)
P 		152.9
(-0.6)
P 		99.9
(-3)
P 		131
B 251.4
(3)
P 		212.6
(1.2)
P 		140
(-2.1)
P 		120.9
(-3)
P 		229.6
(2)
P 		186.3
(0)
P 		131
C 321.8
(3)
P 		184.3
(-0.6)
P 		143.3
(-1.6)
P 		89.5
(-3)
P 		163.2
(-1.1)
P 		213.3
(0.2)
P 		232
avr 226.9
(3) 		209.3
(2) 		153.6
(-1) 		117.4
(-3) 		181.9
(0.5) 		166.5
(-0.3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10019
Sequence Type Exemplar sequence
Representative Public ID M18.2 NCBI
Target Description M18.2 /REP_DB=WormBase Gene ID /WP=CE06194 /TR=SW:Q21557 /GB=CAA92827.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=dynein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069897 NCBI Caenorhabditis elegans Dynein Light Chain family member (dlc-2) (dlc-2) mRNA, complete cds. 11/11 None
SNAP00000023283 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12110664:12111469:-1 11/11 None
GENEFINDER00000023294 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12110664:12111469:-1 11/11 None
M18.2 ENSEMBL cdna:known chromosome:CEL140:IV:12110555:12111546:-1 gene:M18.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12111199-12111475(-) 100.0 100.0
Public Domain and Genome References
Gene Title dynein like
Gene Symbol dlc-2
Ensembl M18.2
Entrez Gene 187460 Entrez gene
SwissProt Q21557 EMBL-EBI
WormBase CE36658 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7017 microtubule-based process inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5875 microtubule associated complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3777 microtubule motor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92827 Hypothetical protein M18.2 [Caenorhabditis elegans] ref|NP_502298.2| Dynein Light Chain family member (dlc-2) [Caenorhabditis elegans] sp|Q21557|DYL2_CAEEL Probable dynein light chain, cytoplasmic 3.0E-47
blast CAE62184 Hypothetical protein CBG06231 [Caenorhabditis briggsae] 3.0E-46
blast BAC05522.1 dynein light chain [Ciona savignyi] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001372 EMBL-EBI Dynein light chain, type 1 2.8E-57
Sequence
Target Sequence 
>C. ELEGANS:188859_AT
ggaagatccacaacgagatatggtgatttctgttgtccgggaggctcagaggctgtacaa
tattgataaagatgtggctgcttttgtgaaggaagagcttgacaagaagttcggcgccac
gtggcatgtcatctgtggaaagtgtttcgggagtcgtgttagttatgaaatgggacattt
tattcttctcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGATCCACAACGAGATATGGTG 326 531 51 Antisense
CGAGATATGGTGATTTCTGTTGTCC 46 251 64 Antisense
ATTTCTGTTGTCCGGGAGGCTCAGA 77 17 76 Antisense
GTCCGGGAGGCTCAGAGGCTGTACA 84 477 85 Antisense
GATGTGGCTGCTTTTGTGAAGGAAG 696 407 121 Antisense
GCTTGACAAGAAGTTCGGCGCCACG 359 307 147 Antisense
CGCCACGTGGCATGTCATCTGTGGA 536 257 165 Antisense
GCATGTCATCTGTGGAAAGTGTTTC 138 311 174 Antisense
GAAAGTGTTTCGGGAGTCGTGTTAG 169 355 188 Antisense
GGGAGTCGTGTTAGTTATGAAATGG 493 495 199 Antisense
ATGGGACATTTTATTCTTCTCAAGT 705 49 220 Antisense
Sequence Source Affymetrix Proprietary Database