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[188858_at] 7TM receptor, srb family

Description F01D4.7 /REP_DB=WormBase Gene ID /WP=CE09159 /TR=O02241 /GB=CAB02886.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 62      4grp_total > 12      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 41.7
(0.6)
M 		35.1
(-3)
A 		46.2
(3)
A 		38.1
(-1.4)
A 		11
B 37.2
(-2.8)
A 		47.2
(3)
A 		36.9
(-3)
A 		38.7
(-2)
A 		10
C 49.8
(-1.1)
A 		39.1
(-2.1)
A 		30
(-3)
A 		91.6
(3)
P 		62
avr 42.9
(-1.3) 		40.5
(-2.1) 		37.7
(-3) 		56.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 15.7
(-3)
A 		57.8
(0.5)
A 		88.2
(3)
P 		40.2
(-1)
A 		84.2
(2.7)
P 		34.7
(-1.4)
A 		73
B 26.7
(-2.6)
A 		48
(0.6)
A 		64
(3)
P 		62.4
(2.8)
A 		50.3
(1)
P 		23.7
(-3)
A 		40
C 41.5
(-1.6)
A 		86.8
(3)
P 		53.5
(-0.4)
A 		62.1
(0.5)
A 		31.2
(-2.6)
A 		27.4
(-3)
A 		59
avr 28
(-3) 		64.2
(2.3) 		68.6
(3) 		54.9
(1) 		55.2
(1) 		28.6
(-2.9) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 15.2
(3)
M 		7.6
(-1.8)
A 		12.1
(1.1)
A 		5.6
(-3)
A 		10
B 11.9
(3)
A 		11.7
(2.7)
A 		8.6
(-2.5)
A 		8.3
(-3)
A 		4
C 16.5
(3)
A 		11.3
(-2.2)
A 		10.5
(-3)
A 		15.5
(2)
P 		6
avr 14.5
(3) 		10.2
(-2.5) 		10.4
(-2.2) 		9.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.9
(-3)
A 		20.6
(1.7)
A 		19.2
(1.3)
P 		10.2
(-1.1)
A 		25.4
(3)
P 		8.4
(-1.5)
A 		23
B 9.3
(-2.8)
A 		16
(0.7)
A 		15.6
(0.5)
P 		16.5
(1)
A 		20.4
(3)
P 		8.9
(-3)
A 		12
C 15.4
(-0.8)
A 		26.5
(3)
P 		13.6
(-1.5)
A 		12.5
(-1.9)
A 		10.1
(-2.7)
A 		9.2
(-3)
A 		17
avr 9.2
(-2.8) 		21
(3) 		16.1
(0.6) 		13.1
(-0.9) 		18.6
(1.8) 		8.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9698
Sequence Type Exemplar sequence
Representative Public ID F01D4.7 NCBI
Target Description F01D4.7 /REP_DB=WormBase Gene ID /WP=CE09159 /TR=O02241 /GB=CAB02886.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069529 NCBI Caenorhabditis elegans Serpentine Receptor, class B (beta) family member (srb-17) (srb-17) mRNA, complete cds. 11/11 None
SNAP00000032300 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10454404:10456617:-1 11/11 None
GENEFINDER00000032314 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10454404:10457818:-1 11/11 None
F01D4.7 ENSEMBL cdna:known chromosome:CEL140:IV:10454404:10456617:-1 gene:F01D4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10455035-10457860(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srb family
Gene Symbol srb-17
Ensembl F01D4.7
Entrez Gene 184054 Entrez gene
SwissProt O02241 EMBL-EBI
WormBase CE38061 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02886 Hypothetical protein F01D4.7 [Caenorhabditis elegans] ref|NP_501930.2| Serpentine Receptor, class B (beta) family member (srb-17) [Caenorhabditis elegans] sp|O02241|SRB17_CAEEL Serpentine receptor class beta-17 (Protein srb-17) 1.0E-157
blast CAB02886 Hypothetical protein F01D4.7 [Caenorhabditis elegans] ref|NP_501930.2| Serpentine Receptor, class B (beta) family member (srb-17) [Caenorhabditis elegans] sp|O02241|SRB17_CAEEL Serpentine receptor class beta-17 (Protein srb-17) 1.0E-152
blast CAB02886 Hypothetical protein F01D4.7 [Caenorhabditis elegans] ref|NP_501930.2| Serpentine Receptor, class B (beta) family member (srb-17) [Caenorhabditis elegans] sp|O02241|SRB17_CAEEL Serpentine receptor class beta-17 (Protein srb-17) 1.0E-112
blast CAE63831 Hypothetical protein CBG08385 [Caenorhabditis briggsae] 2.0E-77
blast CAE63831 Hypothetical protein CBG08385 [Caenorhabditis briggsae] 3.0E-77
blast CAE63831 Hypothetical protein CBG08385 [Caenorhabditis briggsae] 3.0E-50
blast NP_504936 Serpentine Receptor, class B (beta) family member (srb-19) [Caenorhabditis elegans] gb|AAX22290.1| Serpentine receptor, class b (beta) protein 19 [Caenorhabditis elegans] 5.0E-23
blast NP_504936 Serpentine Receptor, class B (beta) family member (srb-19) [Caenorhabditis elegans] gb|AAX22290.1| Serpentine receptor, class b (beta) protein 19 [Caenorhabditis elegans] 5.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501930.2 6 30-49,62-84,99-121,146-168,190-212,245-267
F01D4.7 6 30-49,62-84,99-121,146-168,190-212,245-267
SNAP00000032300 5 36-58,79-101,123-145,178-200,215-237
GENEFINDER00000032314 7 64-83,96-118,133-155,180-202,224-246,279-301,316-338
Sequence
Target Sequence 
>C. ELEGANS:188858_AT
gctctttttgcgttgttcaatcttcctttaatcttttcaatgctttgcatggagttctca
caagttttgatggttattgaaagaacgttggcaagctgtctgttcgtatgttatgagaaa
actacaaaaacaatcggatttgtactcacatcttttgcggtaatcgttccgggattaaca
tgcctttatatgtattatgatgataaattcaactatccacaaatgagtgcaatggcaact
tcaccgtccagtaaattgagaataaattacatttttatcactataaatgtgttgaatgtt
ctgacattgatgcattcaatcgggttgtatcgtcataataaacaaaagataaacatggtg
aaaggccgtgatcattttattctttcatctcgttttcaaatgaacgaaaatgtcagttca
tcaaagcttttgtggcggctttcgtgtgcccaactgattattttcttgctttatggatgt
gcaatgtacagtttgagaatctttttaccaggagaaagaagtgcagtttggcaagcggtc
actgaatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTTTTTGCGTTGTTCAATCTTC 65 301 526 Antisense
GTTCAATCTTCCTTTAATCTTTTCA 553 445 540 Antisense
AATGCTTTGCATGGAGTTCTCACAA 68 167 564 Antisense
GCAAGCTGTCTGTTCGTATGTTATG 54 321 616 Antisense
ACTCACATCTTTTGCGGTAATCGTT 432 101 669 Antisense
ATCGTTCCGGGATTAACATGCCTTT 271 35 688 Antisense
GAGTGCAATGGCAACTTCACCGTCC 405 401 750 Antisense
GCATTCAATCGGGTTGTATCGTCAT 598 307 837 Antisense
AAGGCCGTGATCATTTTATTCTTTC 384 159 887 Antisense
TTCGTGTGCCCAACTGATTATTTTC 365 695 966 Antisense
GTTTGGCAAGCGGTCACTGAATTTT 177 453 1051 Antisense
Sequence Source Affymetrix Proprietary Database